Here is my "non-scientific" feedback, as I had not deal with WeatherDuino 
myself, and some of your inquiries, were mine as well.

Besides some similarities (as I learned), dealing with RPi is not the same 
as dealing w Arduino

   - RPi is to behave as a "micro-computer", while Arduino is to behave as 
   a device.
   - RPi you may work with desktop, programs and packages, while Arduino 
   may require more programing skills
   - RPi you connect the usual computer periphericals, while Arduino might 
   require a lot more assembly and welding stuff

On my side, while I truly enjoy to play with RPi, with Arduino was not the 
same pleasant experience. Although I'm a truly handyman, to deal with tiny 
welding was frustrating (just for a start, not even mentioning programing).

WeatherDuino seems to come mostly assemble, but to note that you have to 
deal with both transmitter/receiver and still deal with all sensors (and as 
you note,  compatibility may vary).

Bottom line, WeatherDuino might be a interesting project, but think only if 
you already are well rounded with Arduino (not RPi), programing, tiny 
welding and devote time for the experience... as a hobby.

Otherwise (as I may have realized myself), may be more "trouble" than "fun".

Wishing well for those going through this assembly. Wishing well to the 
WeatherDuino project. But I may not go through this path...

Best,
Xant

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