A couple comments:

1) To remove the "emacs: Command not found", you could install emacs.  For example, something like "sudo apt-get install emacs25" on Ubuntu [ https://askubuntu.com/questions/851633/emacs-25-on-ubuntu-16-10 ].  Or in .bashrc, you could change

export EDITOR="emacs"

to another text editor like vi (or gedit, nano, etc.)[ https://en.wikipedia.org/wiki/Category:Linux_text_editors ]

export EDITOR="vi"

2) WIEN2k 18.2 should have:

username@computername:~$ cat $WIENROOT/WIEN2k_VERSION
WIEN2k_18.2 (Release 17/7/2018)
username@computername:~$ grep "The program symmetso" $WIENROOT/initso_lapw
The program symmetso detects the proper symmetry and creates new struct and

The misspelled "dedects" indicates that you are likely using an older WIEN2k version.  Older versions had some issues with or improvements made for spin orbit (SO) calculations. Full details can be found on the WIEN2k updates page [ http://susi.theochem.tuwien.ac.at/reg_user/updates/ ].  For example:

VERSION_18.1: 1.6.2018

...

SRC_symmetso: extensive fixes for writing correct files with modified symmetry. Corrects also r2v, vresp files (if present); tol=1.e-4

On 11/8/2018 2:45 AM, Anup Shakya wrote:
Dear Prof. Blaha,

I have used the following structure file for non-magnetic calculations with U and J. The U and J was used for the Sm atom and the calculations were fine. I performed the calculations using runsp_c_lapw -orb -p.

Title
P   LATTICE,NONEQUIV.ATOMS:  2 221 Pm-3m
MODE OF CALC=RELA unit=ang
  7.812131  7.812131  7.812131 90.000000 90.000000 90.000000
ATOM   1: X=0.00000000 Y=0.00000000 Z=0.00000000
          MULT= 1          ISPLIT= 2
Sm1        NPT=  781  R0=0.00001000 RMT= 2.50000   Z: 62.0
LOCAL ROT MATRIX:    1.0000000 0.0000000 0.0000000
                     0.0000000 1.0000000 0.0000000
                     0.0000000 0.0000000 1.0000000
ATOM  -2: X=0.20700000 Y=0.50000000 Z=0.50000000
          MULT= 6          ISPLIT=-2
      -2: X=0.79300000 Y=0.50000000 Z=0.50000000
      -2: X=0.50000000 Y=0.20700000 Z=0.50000000
      -2: X=0.50000000 Y=0.79300000 Z=0.50000000
      -2: X=0.50000000 Y=0.50000000 Z=0.20700000
      -2: X=0.50000000 Y=0.50000000 Z=0.79300000
B 1        NPT=  781  R0=0.00010000 RMT= 1.61      Z:  5.0
LOCAL ROT MATRIX:    0.0000000 0.0000000 1.0000000
                     0.0000000 1.0000000 0.0000000
                    -1.0000000 0.0000000 0.0000000
  48      NUMBER OF SYMMETRY OPERATIONS

After this I performed GGA+SOC+U calculations. The direction of magnetization is chosen along 001. (Even if I change the direction of magnetization to 010 or 100 the structure files looks the same as below).

Title                                    s-o calc. M||  0.00  0.00  1.00
P                            3 221
             RELA
  7.812131  7.812131  7.812131 90.000000 90.000000 90.000000
ATOM  -1: X=0.00000000 Y=0.00000000 Z=0.00000000
          MULT= 1          ISPLIT=-2
Sm1        NPT=  781  R0=.000010000 RMT= 2.50000   Z:  62.00000
LOCAL ROT MATRIX:    1.0000000 0.0000000 0.0000000
                     0.0000000 1.0000000 0.0000000
                     0.0000000 0.0000000 1.0000000
ATOM  -2: X=0.20700000 Y=0.50000000 Z=0.50000000
          MULT= 4          ISPLIT= 8
      -2: X=0.79300000 Y=0.50000000 Z=0.50000000
      -2: X=0.50000000 Y=0.20700000 Z=0.50000000
      -2: X=0.50000000 Y=0.79300000 Z=0.50000000
B 1        NPT=  781  R0=.000100000 RMT= 1.61000   Z:   5.00000
LOCAL ROT MATRIX:    0.0000000 0.0000000 1.0000000
                     0.0000000 1.0000000 0.0000000
                    -1.0000000 0.0000000 0.0000000
ATOM  -3: X=0.50000000 Y=0.50000000 Z=0.20700000
          MULT= 2          ISPLIT=-2
      -3: X=0.50000000 Y=0.50000000 Z=0.79300000
B 1        NPT=  781  R0=.000100000 RMT= 1.61000   Z:   5.00000
LOCAL ROT MATRIX:    1.0000000 0.0000000 0.0000000
                     0.0000000 1.0000000 0.0000000
                     0.0000000 0.0000000 1.0000000
  16      NUMBER OF SYMMETRY OPERATIONS
 1 0 0 0.0000000
 0 1 0 0.0000000
 0 0 1 0.0000000
The command that I used is
initso_lapw
Magnetization direction  0 0 1, Emax default 5 Ryd
-->Add RLO for NONE, ALL, CHOOSE elements? (N/a/c) : c
p-Energy parameters for Sm1 atom is :
 1   -1.58      0.002 CONT 1
 1    0.30      0.000 CONT 1
No RLO chosen for B atom
In spinpolarized case SO may reduce symmetry.
The program symmetso dedects the proper symmetry and creates new struct and input files. (Note, equivalent atoms could become inequivalent in some cases).
Do you have a spinpolarized case (and want to run symmetso) ? (y/N)y
   90.0000000000000        90.0000000000000 1.57079632679490      T
   1.00000000000000       0.000000000000000E+000 0.000000000000000E+000
  6.123233995736766E-017   1.00000000000000 0.000000000000000E+000
  6.123233995736766E-017  6.123233995736766E-017 1.00000000000000
0.1u 0.0s 0:00.27 74.0% 0+0k 2232+4776io 6pf+0w
emacs: Command not found.
 A new structure for SO calculations has been created (_so).
 If you commit it will create new smb6UJ7eV.struct, in1(c), in2c, inc,
 clmsum/up/dn, vspup/dn and vnsup/dn files. (Please SAVE any previous
 calculations)
NOTE: Files for -orb (smb6UJ7eV.indm(c),inorb,dmatup/dn) must be adapted manually
Do you want to use the new structure for SO calculations ? (y/N)y
 We run KGEN to generate a new kmesh for the SO calculation:
Number of Kpoint in smb6UJ7eV.klist is : 1000
Spinorbit is now ready to run.
Then I used the following command:
runsp_c_lapw -so -orb -p.

If you need any more information, then please let me know. Looking forward to hearing from you.

Sincerely,
Anup Pradhan Sakhya (Ph.D.)
Visiting Post-Doctoral Fellow
DCMP&MS, TIFR, Mumbai

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