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_____ Professor Laurence Marks "Research is to see what everybody else has seen, and to think what nobody else has thought", Albert Szent-Gyorgi www.numis.northwestern.edu On Wed, Jan 9, 2019, 23:21 Lawal Mohammed <[email protected] wrote: > Thank you very much Prof. L. Mark, > > "ldd lapw0" returned > > linux-vdso.so.1 => (0x00007fff3cfa7000) > libiomp5.so => > /software/intel2015-1/composer_xe_2015.3.187/compiler/lib/intel64/libiomp5.so > (0x00002b8340b5f000) > libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b8340e9f000) > libm.so.6 => /lib64/libm.so.6 (0x00002b83410bf000) > libdl.so.2 => /lib64/libdl.so.2 (0x00002b83413c7000) > libc.so.6 => /lib64/libc.so.6 (0x00002b83415cf000) > /lib64/ld-linux-x86-64.so.2 (0x00002b8340937000) > libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b8341997000) > > The compilation and execution was done using composer_xe_2015.3.187, > libiomp5.so > seems to be in right directory. Please which part of compilation option > should I edit, and I couldn't figure out what you mean by static > compilation in this case. > > The system admin is interested, so I have already forward the link to this > thread to him/them. > > With kind regards > > > *Lawal * > > > On Thursday, January 10, 2019, 10:17:23 AM GMT+8, Laurence Marks < > [email protected]> wrote: > > > Try "ldd lapw0" to see what shared libraries are being used, then edit > your compilation options to do static compilation. Depending upon what > compiler your have the options will change; do "ifort --help | more" or > "ifort --help > Fort.txt" and read.... (or gfortran, etc). > > At least for the non-mpi you can build lapw0 & others without any shared > libraries. I have never seen this fail, but it might. > > On Wed, Jan 9, 2019, 19:58 Lawal Mohammed <[email protected] > wrote: > > Dear Developers and Users, > > I am facing a problem and need your help. > The issue is an error when I submitted a job on cluster machine. The error > message is: > > Calculating Bismuthtest1 in /home/username/WIEN2k/Bismuthtest1 > on node5 with PID 21645 > using WIEN2k_18.2 (Release 17/7/2018) in /software/wien2k-18.2 > > start (Thu Jan 10 09:48:12 CST 2019) with lapw0 (100/99 to go) > > cycle 1 (Thu Jan 10 09:48:12 CST 2019) (100/99 to go) > > > lapw0 -p (09:48:12) starting parallel lapw0 at Thu Jan 10 09:48:12 > CST 2019 > -------- .machine0 : processors > running lapw0 in single mode > 0.022u 0.036s 0:00.08 62.5% 0+0k 0+56io 0pf+0w > error: command /software/wien2k-18.2/lapw0para lapw0.def failed > > stop error > > In the output file the error is: > lapw0: relocation error: lapw0: symbol kmp_aligned_malloc, version VERSION > not defined in file libiomp5.so with link time reference > grep: *scf1*: No such file or directory > grep: lapw2*.error: No such file or directory > > Many thanks to Gavin for pointing out that the error was due to clash > between other libraries with the Intel Fortran library. However, after I > reported the issue, system admin confirmed that the environmental variables > was okay. Any help to rectify this issue is highly appreciated. > > I will provide addition information if needed. > > Thanks alot for your time. > With kind regards. > > > *Lawal * > > _______________________________________________ > Wien mailing list > [email protected] > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien > <https://urldefense.proofpoint.com/v2/url?u=http-3A__zeus.theochem.tuwien.ac.at_mailman_listinfo_wien&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=w8NMWlug_NljUs7DvS4hO5Y8qdsPXZAFPzN3mXPkZVg&s=IRX0qHi3UxOEwl7bHFAy375eVzPorzu4EzT1jCBhHCY&e=> > SEARCH the MAILING-LIST at: > http://www.mail-archive.com/[email protected]/index.html > <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_index.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=w8NMWlug_NljUs7DvS4hO5Y8qdsPXZAFPzN3mXPkZVg&s=ky3LkhFEGwJeuj5tphUa5W9R-YAxJCqYlNVmrDtJOLk&e=> >
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