Ok. So the problem seems to be that in your linux the ssh does not
send/accept the "environment".
What do you get with:
ssh vsli2 'echo $WIENROOT'
If you have root permissions, I suggest to do the following:
At least on my Linux (Suse) there is a /etc/ssh directory, with files
ssh_config and sshd_config.
Edit these files and add lines:
SendEnv * # in ssh_config
AcceptEnv * # in sshd_config
On 9/27/19 11:20 AM, Indranil mal wrote:
Respected Sir, As per Your suggestion I have done the single process
with one iteration successfully encountered no issue in all the nodes.
However in parallel running facing the same error
grep: *scf1*: No such file or directory
cp: cannot stat '.in.tmp': No such file or directory
FERMI - Error
grep: *scf1*: No such file or directory
Parallel.scf1_1: No such file or directory.
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
LAPW0 END
hup: Command not found.
Previously I was doing a mistake with user name and home directory now in all
the pc the user name and the home directory is same (/home/vlsi) is same and
the working directory is accessible from every node.
(ls -l $WIENROOT/lapw1c
-rwxr-xr-x 1 vlsi vlsi 2151824 Sep 26 02:41 /servernode01/lapw1c) this reflects
in all the pcs.
On Thu, Sep 26, 2019 at 1:27 PM Peter Blaha
<pbl...@theochem.tuwien.ac.at <mailto:pbl...@theochem.tuwien.ac.at>> wrote:
First of all, one of the errors was: lapw1c: command not found
You showed us only the existence of "lapw1", not "lapw1c" with the ls
commands.
However, since you also have: fixerror_lapw: command not found
I don't think that this is the problem.
-------------
I'm more concerned about the different usernames/owners of lapw1 on
different computers.
It is not important who owns $WIENROOT/*, as long as everybody has r-x
permissions.
However, what is your username and your home-directory on the different
machines ? It must be the same ! And do you have access to the actual
working directory ?
In what directory did you start the calculations?
Is it a directory called "Parallel" ? What is the full path of that on
every computer (/casenode1/Parallel ?)
----------------------
First check would be:
On vlsi1 change into the working directory (Parallel ?) and run one
iteration without parallelization: run -i 1
then login to ssh vsli2 (passwordless), cd into "Parallel" and do
another non-parallel cycle. Does it work ?
-----------
On 9/26/19 11:48 AM, Indranil mal wrote:
> Dear developers and users
> I have 5 individual Linux
> (Ubuntu) pc with intel i7 octa core processors and 16GB RAM in each
> connected via a 1GBps LAN. password less ssh working properly. I
have
> installed WIEN2K 19 in the one machine (M1 server) in the directory
> "/servernode1" and the case directory is "/casenode1" and
through NFS I
> have mounted the "servernode1", and "casenode1" in other four pcs
with
> same name local folders ("servernode1", and "casenode1") in them.
I have
> installed ,intel compilers, libxc, fftw, elpa in all the nodes
> individually. I have manually edited the bash file $WIENROOT
path and
> case directory and the WIEN2K options file. Keep all the value
same in
> all the client nodes as it is in the server node.
>
> alias cdw="cd /casenode1"
> export OMP_NUM_THREADS=4
> #export LD_LIBRARY_PATH=.....
> export EDITOR="emacs"
> export SCRATCH=./
> export WIENROOT=/servernode1
> export W2WEB_CASE_BASEDIR=/casenode1
> export STRUCTEDIT_PATH=$WIENROOT/SRC_structeditor/bin
>
> Now when I am doing parallel calculations with all the client
nodes in
> machine file ,
> # k-points are left, they will be distributed to the
residual-machine_name.
> #
> 1:vlsi1
> 1:vlsi2
> 1:vlsi3
> 1:vlsi4
>
> granularity:1
> extrafine:1
> #
>
>
> and getting the following error
>
> grep: *scf1*: No such file or directory
> cp: cannot stat '.in.tmp': No such file or directory
> FERMI - Error
> grep: *scf1*: No such file or directory
> Parallel.scf1_1: No such file or directory.
> bash: fixerror_lapw: command not found
> bash: lapw1c: command not found
> bash: fixerror_lapw: command not found
> bash: lapw1c: command not found
> LAPW0 END
> hup: Command not found.
>
> ###################Error file lapw2 error
> 'LAPW2' - can't open unit: 30
> 'LAPW2' - filename: Parallel.energy_1
> ** testerror: Error in Parallel LAPW2
>
> I have checked the with " ls -l $WIENROOT/lapw1" as suggested in the
> previous mailing list and got the
> -rwxr-xr-x 1 vlsi vlsi 2139552 Sep 26 02:41 /servernode1/lapw1 for
> server (vlsi is the user name in server)
> -rwxr-xr-x 1 vlsi1 vlsi1 2139552 Sep 26 02:41 /servernode1/lapw1 (in
> node1 the user name is vlsi1)
> -rwxr-xr-x 1 vlsi2 vlsi2 2139552 Sep 26 02:41 /servernode1/lapw1 (in
> node2 the user name is vlsi2)
> please help
>
>
> thanking you
> Indranil
>
>
>
>
> _______________________________________________
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--
P.Blaha
--------------------------------------------------------------------------
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: bl...@theochem.tuwien.ac.at
<mailto:bl...@theochem.tuwien.ac.at> WIEN2k: http://www.wien2k.at
WWW: http://www.imc.tuwien.ac.at/TC_Blaha
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SEARCH the MAILING-LIST at:
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--
P.Blaha
--------------------------------------------------------------------------
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: bl...@theochem.tuwien.ac.at WIEN2k: http://www.wien2k.at
WWW: http://www.imc.tuwien.ac.at/TC_Blaha
--------------------------------------------------------------------------
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