Thanks Laurence for your suggestions!
1) Using ifort / icc .. Compiling fftw3 with icx of the one-api package
and "make check" gives the same relink error during mpirun .
2) Unfortunately I have only the latest and last ifort version
3) Does not change anything for the compilation of fftw3 because it is
completely written in C and only linked to ifort in the WIEN2k compilation.
Thanks again for your help!
Best regards,
Michael
Am 29.08.2025 um 13:35 schrieb Laurence Marks:
This link may help: https://github.com/spack/spack/issues/48296 . It
appears to be an inconsistency between system libraries and ifort. Not
easy to cure. (There might be other pages, search with ifort + Relink.)
Three possibilities:
1. Compile fftw3 with ifort/icc. While ifort & gcc are supposed to be
compatible, it could be that they are using different system libraries.
2. Regress to 2021.1.1 . I tested others and was not convinced they
were better, in fact they could be buggy. You don't have to uninstall
other versions, use a config file.
3. Add -mcmodel=medium to your ifort line. I had to after a recent OS
update, although I cannot remember the exact reason why.
___
Emeritus Professor Laurence Marks (Laurie)
Department of Materials Science and Engineering, Northwestern University
www.numis.northwestern.edu <http://www.numis.northwestern.edu>
"Research is to see what everybody else has seen, and to think what
nobody else has thought" Albert Szent-Györgyi
On Fri, Aug 29, 2025, 05:54 Michael Fechtelkord via Wien
<[email protected]> wrote:
Dear all,
I am back now to ifort 2021.13 because it crashes much less as the
new
ifx compiler, also it produces omp errors using fftw3 during
compilation.
All worked fine since the last Open Suse Tumbleweed version using
Kernel
6.16.3-1 (Opensuse Tumbleweed 202250827). Parallel Jobs terminate
when
using "mpirun" with the following error. The same error appears
when I
have compiled fftw 3.10 with gcc 15.1 and run "make check" the check
routine crashes when using mpirun with the same error.
Does somebody know what that relink error means and how to solve
it? Is
it maybe the opensuse libm.so.6 library (glibc version 2.42.1)
causing
the error, because the new version does not contain the symbol,
libmpi
is reqeusting?
Best regards,
Michael
---------------
EXECUTING: mpirun -np 4 -machinefile .machine_nmrinteg
/usr/local/WIEN2k/nmr_mpi -case MgF2 -mode integ -green
/usr/local/WIEN2k/nmr_mpi: Relink
`/opt/intel/oneapi/mpi/2021.13/lib/libmpi.so.12' with
`/lib64/libm.so.6'
for IFUNC symbol `modff'
/usr/local/WIEN2k/nmr_mpi: Relink
`/opt/intel/oneapi/mpi/2021.13/lib/libmpi.so.12' with
`/lib64/libm.so.6'
for IFUNC symbol `modff'
/usr/local/WIEN2k/nmr_mpi: Relink
`/opt/intel/oneapi/mpi/2021.13/lib/libmpi.so.12' with
`/lib64/libm.so.6'
for IFUNC symbol `modff'
/usr/local/WIEN2k/nmr_mpi: Relink
`/opt/intel/oneapi/mpi/2021.13/lib/libmpi.so.12' with
`/lib64/libm.so.6'
for IFUNC symbol `modff'
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 0 PID 396989 RUNNING AT localhost
= KILLED BY SIGNAL: 11 (Segmentation fault)
===================================================================================
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 1 PID 396990 RUNNING AT localhost
= KILLED BY SIGNAL: 11 (Segmentation fault)
===================================================================================
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 2 PID 396991 RUNNING AT localhost
= KILLED BY SIGNAL: 11 (Segmentation fault)
===================================================================================
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 3 PID 396992 RUNNING AT localhost
= KILLED BY SIGNAL: 11 (Segmentation fault)
===================================================================================
stop
/opt/fftw-3.3.10/mpi/.libs/mpi-bench: Relink
`/opt/intel/oneapi/mpi/2021.13/lib/libmpi.so.12' with
`/lib64/libm.so.6'
for IFUNC symbol `modff'
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 0 PID 183831 RUNNING AT planck
= KILLED BY SIGNAL: 11 (Segmentation fault)
===================================================================================
FAILED mpirun -np 1 /opt/fftw-3.3.10/mpi/mpi-bench:
--
Dr. Michael Fechtelkord
Institut für Geowissenschaften
Ruhr-Universität Bochum
Universitätsstr. 150
<https://www.google.com/maps/search/Universit%C3%A4tsstr.+150?entry=gmail&source=g>
D-44780 Bochum
Phone: +49 (234) 32-24380
Fax: +49 (234) 32-04380
Email:[email protected]
<mailto:email%[email protected]>
Web
Page:https://www.ruhr-uni-bochum.de/kristallographie/kc/mitarbeiter/fechtelkord/
_______________________________________________
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http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
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http://www.mail-archive.com/[email protected]/index.html
--
Dr. Michael Fechtelkord
Institut für Geowissenschaften
Ruhr-Universität Bochum
Universitätsstr. 150
D-44780 Bochum
Phone: +49 (234) 32-24380
Fax: +49 (234) 32-04380
Email:[email protected]
Web
Page:https://www.ruhr-uni-bochum.de/kristallographie/kc/mitarbeiter/fechtelkord/
_______________________________________________
Wien mailing list
[email protected]
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
SEARCH the MAILING-LIST at:
http://www.mail-archive.com/[email protected]/index.html
