I also can help in extracting PMID's from the Wikipedia articles. What else do you need? Just PMIDs?
On Tue, Oct 21, 2014 at 2:00 PM, < [email protected]> wrote: > Send Wiki-research-l mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.wikimedia.org/mailman/listinfo/wiki-research-l > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Wiki-research-l digest..." > > > Today's Topics: > > 1. Extracting PMIDs (Jake Orlowitz) > 2. Re: [OpenAccess] Extracting PMIDs (Jeremy Baron) > 3. Re: Extracting PMIDs (Andrew G. West) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 20 Oct 2014 23:57:49 -0400 > From: Jake Orlowitz <[email protected]> > To: [email protected], Open Access discussions > <[email protected]> > Subject: [Wiki-research-l] Extracting PMIDs > Message-ID: > <CABL4yajbL9FuL-vEL= > [email protected]> > Content-Type: text/plain; charset="utf-8" > > Hi folks, > > Relaying a question from a Stanford medical researcher: > > "Do you know if it is possible to extract PubMed ID (PMID) or PMCIDs from > Wiki references? Furthermore, could you dump those IDs out into a list for > analysis?" > > Best, > Jake Orlowitz (Ocaasi) > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > https://lists.wikimedia.org/pipermail/wiki-research-l/attachments/20141020/e42c0d31/attachment-0001.html > > > > ------------------------------ > > Message: 2 > Date: Tue, 21 Oct 2014 04:05:16 +0000 > From: Jeremy Baron <[email protected]> > To: Open Access discussions <[email protected]> > Cc: [email protected] > Subject: Re: [Wiki-research-l] [OpenAccess] Extracting PMIDs > Message-ID: > <CAE-2OCbd3LKJRp+fxAndVDDRDJzk= > [email protected]> > Content-Type: text/plain; charset=UTF-8 > > On Tue, Oct 21, 2014 at 3:57 AM, Jake Orlowitz <[email protected]> > wrote: > > "Do you know if it is possible to extract PubMed ID (PMID) or PMCIDs from > > Wiki references? Furthermore, could you dump those IDs out into a list > for > > analysis?" > > I think so. > > Can you tell us more about what they want? > > Using [[wikipedia:ebola virus disease]] as an example: > > <ref name="Gatherer 2014">{{cite journal | author = Gatherer D | title = > The 2014 Ebola virus disease outbreak in West Africa | journal = J. Gen. > Virol. | volume = 95 | issue = Pt 8 | pages = 1619–1624 | year = 2014 | > pmid = 24795448 | doi = 10.1099/vir.0.067199-0 }}</ref> > > One of the params is "pmid". > > -Jeremy > > > > ------------------------------ > > Message: 3 > Date: Tue, 21 Oct 2014 00:20:15 -0400 > From: "Andrew G. West" <[email protected]> > To: [email protected] > Subject: Re: [Wiki-research-l] Extracting PMIDs > Message-ID: <[email protected]> > Content-Type: text/plain; charset=UTF-8; format=flowed > > Jake, > > Yes, its a rather straightforward parse based on the citation format > which Jeremy described. Doc James and I already have this coded up for > a soon to be published [[WP:MED]] readership/editorship paper. > > Searching for PMID's in the entirety of the Wikipedia article base would > be a bit time consuming -- but if one needs to pull down only articles > in WikiProject Medicine, for example, I am also able to help on that front. > > Perhaps we'll take this offline, but if anyone else is interested in the > dirty details, feel free to contact one of us off-list. -AW > > -- > Andrew G. West, PhD > http://www.andrew-g-west.com > > > On 10/20/2014 11:57 PM, Jake Orlowitz wrote: > > Hi folks, > > > > Relaying a question from a Stanford medical researcher: > > > > "Do you know if it is possible to extract PubMed ID (PMID) or PMCIDs > > from Wiki references? Furthermore, could you dump those IDs out into a > > list for analysis?" > > > > Best, > > Jake Orlowitz (Ocaasi) > > > > > > _______________________________________________ > > Wiki-research-l mailing list > > [email protected] > > https://lists.wikimedia.org/mailman/listinfo/wiki-research-l > > > > > > > ------------------------------ > > _______________________________________________ > Wiki-research-l mailing list > [email protected] > https://lists.wikimedia.org/mailman/listinfo/wiki-research-l > > > End of Wiki-research-l Digest, Vol 110, Issue 10 > ************************************************ > -- Thank you. Alex Druk [email protected] (775) 237-8550 Google voice
_______________________________________________ Wiki-research-l mailing list [email protected] https://lists.wikimedia.org/mailman/listinfo/wiki-research-l
