Smalyshev created this task.
Smalyshev added subscribers: Smalyshev, Manybubbles, Haasepeter, Thompsonbry,
Thompsonbry.systap.
Smalyshev added projects: Search-Team, Wikidata-Query-Service.
Restricted Application added a subscriber: Aklapper.
TASK DESCRIPTION
Following crash happened when running update:
```
19:46:43.487 [main] DEBUG o.w.query.rdf.tool.rdf.RdfRepository - Setting last
updated time to Tue Apr 28 16:47:33 UTC 2015
Exception in thread "main"
org.wikidata.query.rdf.tool.exception.ContainedException: Non-200 response from
triple store: HttpResponseProxy{HTTP/1.1 500 Server Er
ror [Content-Type: text/plain, Transfer-Encoding: chunked, Server:
Jetty(9.2.z-SNAPSHOT)] ResponseEntityProxy{[Content-Type: text/plain,Chunked:
true]}} body=
SPARQL-UPDATE: updateStr=DELETE {
<http://www.wikidata.org> <http://schema.org/dateModified> ?o .
}
WHERE {
<http://www.wikidata.org> <http://schema.org/dateModified> ?o .
};
INSERT DATA {
<http://www.wikidata.org> <http://schema.org/dateModified>
"2015-04-28T16:47:33.000Z"^^<xsd:dateTime> .
}
java.util.concurrent.ExecutionException:
java.util.concurrent.ExecutionException:
org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: Problem
with entry at -711345699177889370: lastRootBlock=rootBlock{ rootBlock=0,
challisField=2740925, version=3, nextOffset=3775731623797917,
localTime=1430247841782 [Tu
esday, April 28, 2015 7:04:01 PM UTC], firstCommitTime=1428692901050 [Friday,
April 10, 2015 7:08:21 PM UTC], lastCommitTime=1430247841781 [Tuesday, April
28, 201
5 7:04:01 PM UTC], commitCounter=2740925,
commitRecordAddr={off=NATIVE:-165623078,len=422},
commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1
, quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388,
storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42,
checksum=-498521427
, createTime=1428691460132 [Friday, April 10, 2015 6:44:20 PM UTC],
closeTime=0}
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:188)
at
com.bigdata.rdf.sail.webapp.BigdataServlet.submitApiTask(BigdataServlet.java:261)
at
com.bigdata.rdf.sail.webapp.QueryServlet.doSparqlUpdate(QueryServlet.java:359)
at
com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:165)
at
com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237)
at
com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:137)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at
org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:769)
at
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
at
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
at
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1125)
at
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
at
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1059)
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at
org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
at
org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:110)
at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
at org.eclipse.jetty.server.Server.handle(Server.java:497)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
at
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:248)
at
org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
at
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:610)
at
org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:539)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.util.concurrent.ExecutionException:
org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: Problem
with entry at -711345699177889370: lastRootBlock=rootBlock{ rootBlock=0,
challisField=2740925, version=3, nextOffset=3775731623797917,
localTime=1430247841782 [Tuesday, April 28, 2015 7:04:01 PM UTC],
firstCommitTime=1428692901050 [Friday, April 10, 2015 7:08:21 PM UTC],
lastCommitTime=1430247841781 [Tuesday, April 28, 2015 7:04:01 PM UTC],
commitCounter=2740925, commitRecordAddr={off=NATIVE:-165623078,len=422},
commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1,
quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388,
storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42,
checksum=-498521427, createTime=1428691460132 [Friday, April 10, 2015 6:44:20
PM UTC], closeTime=0}
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:188)
at
com.bigdata.rdf.sail.webapp.QueryServlet$SparqlUpdateTask.call(QueryServlet.java:460)
at
com.bigdata.rdf.sail.webapp.QueryServlet$SparqlUpdateTask.call(QueryServlet.java:371)
at
com.bigdata.rdf.task.ApiTaskForIndexManager.call(ApiTaskForIndexManager.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at
com.bigdata.rdf.task.AbstractApiTask.submitApiTask(AbstractApiTask.java:365)
at
com.bigdata.rdf.sail.webapp.BigdataServlet.submitApiTask(BigdataServlet.java:258)
... 26 more
Caused by: org.openrdf.query.UpdateExecutionException:
java.lang.RuntimeException: Problem with entry at -711345699177889370:
lastRootBlock=rootBlock{ rootBlock=0, challisField=2740925, version=3,
nextOffset=3775731623797917, localTime=1430247841782 [Tuesday, April 28, 2015
7:04:01 PM UTC], firstCommitTime=1428692901050 [Friday, April 10, 2015 7:08:21
PM UTC], lastCommitTime=1430247841781 [Tuesday, April 28, 2015 7:04:01 PM UTC],
commitCounter=2740925, commitRecordAddr={off=NATIVE:-165623078,len=422},
commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1,
quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388,
storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42,
checksum=-498521427, createTime=1428691460132 [Friday, April 10, 2015 6:44:20
PM UTC], closeTime=0}
at
com.bigdata.rdf.sparql.ast.eval.ASTEvalHelper.executeUpdate(ASTEvalHelper.java:1303)
at
com.bigdata.rdf.sail.BigdataSailUpdate.execute2(BigdataSailUpdate.java:152)
at
com.bigdata.rdf.sail.webapp.BigdataRDFContext$UpdateTask.doQuery(BigdataRDFContext.java:1683)
at
com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.innerCall(BigdataRDFContext.java:1310)
at
com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1275)
at
com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:517)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
... 1 more
Caused by: java.lang.RuntimeException: Problem with entry at
-711345699177889370: lastRootBlock=rootBlock{ rootBlock=0,
challisField=2740925, version=3, nextOffset=3775731623797917,
localTime=1430247841782 [Tuesday, April 28, 2015 7:04:01 PM UTC],
firstCommitTime=1428692901050 [Friday, April 10, 2015 7:08:21 PM UTC],
lastCommitTime=1430247841781 [Tuesday, April 28, 2015 7:04:01 PM UTC],
commitCounter=2740925, commitRecordAddr={off=NATIVE:-165623078,len=422},
commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1,
quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388,
storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42,
checksum=-498521427, createTime=1428691460132 [Friday, April 10, 2015 6:44:20
PM UTC], closeTime=0}
at
com.bigdata.journal.AbstractJournal.commit(AbstractJournal.java:3113)
at
com.bigdata.rdf.store.LocalTripleStore.commit(LocalTripleStore.java:99)
at
com.bigdata.rdf.sail.BigdataSail$BigdataSailConnection.commit2(BigdataSail.java:3370)
at
com.bigdata.rdf.sail.BigdataSailRepositoryConnection.commit2(BigdataSailRepositoryConnection.java:272)
at
com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.convertCommit(AST2BOpUpdate.java:353)
at
com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.convertUpdate(AST2BOpUpdate.java:307)
at
com.bigdata.rdf.sparql.ast.eval.ASTEvalHelper.executeUpdate(ASTEvalHelper.java:1295)
... 9 more
Caused by: java.lang.RuntimeException: Problem with entry at
-711345699177889370
at com.bigdata.rwstore.RWStore.freeDeferrals(RWStore.java:4967)
at com.bigdata.rwstore.RWStore.checkDeferredFrees(RWStore.java:3539)
at
com.bigdata.journal.RWStrategy.checkDeferredFrees(RWStrategy.java:781)
at
com.bigdata.journal.AbstractJournal$CommitState.writeCommitRecord(AbstractJournal.java:3476)
at
com.bigdata.journal.AbstractJournal$CommitState.access$2800(AbstractJournal.java:3278)
at
com.bigdata.journal.AbstractJournal.commitNow(AbstractJournal.java:4088)
at
com.bigdata.journal.AbstractJournal.commit(AbstractJournal.java:3111)
... 15 more
Caused by: java.lang.RuntimeException: addr=-157604858 :
cause=java.lang.IllegalStateException: Bad Address: length requested greater
than allocated slot
at com.bigdata.rwstore.RWStore.getData(RWStore.java:2190)
at com.bigdata.rwstore.RWStore.getData(RWStore.java:1989)
at com.bigdata.rwstore.RWStore.getData(RWStore.java:2033)
at com.bigdata.rwstore.RWStore.getData(RWStore.java:1989)
at com.bigdata.rwstore.RWStore.freeDeferrals(RWStore.java:4857)
at com.bigdata.rwstore.RWStore.freeDeferrals(RWStore.java:4953)
... 21 more
Caused by: java.lang.IllegalStateException: Bad Address: length requested
greater than allocated slot
at com.bigdata.rwstore.RWStore.getData(RWStore.java:2082)
... 26 more
at
org.wikidata.query.rdf.tool.rdf.RdfRepository.execute(RdfRepository.java:296)
at
org.wikidata.query.rdf.tool.rdf.RdfRepository.updateLeftOffTime(RdfRepository.java:255)
at org.wikidata.query.rdf.tool.Update.run(Update.java:235)
at org.wikidata.query.rdf.tool.Update.main(Update.java:100)
```
TASK DETAIL
https://phabricator.wikimedia.org/T97468
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To: Smalyshev
Cc: Thompsonbry.systap, Thompsonbry, Haasepeter, Manybubbles, Aklapper,
Smalyshev, jkroll, Wikidata-bugs, Jdouglas, aude, daniel, JanZerebecki
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