Hello, The Gene Wiki team [1] is currently loading and synchronizing several biomedical ontologies from the OBO Foundry [2]. We do have somewhat generalizable code for creating Wikidata importers from OWL files [3]. For the moment, we have held back doing mass imports of *all* CC0 ontologies because each bot still requires customization and maintenance, and keeping the synchronization current is a continual challenge [4]. (And, as a general principle we only import resources that we ourselves have a tangible use for to avoid "stamp collecting".) If there are specific ontologies that you are interested in importing, we are happy to coordinate to avoid duplication of effort.
Best, -andrew [1]: https://www.wikidata.org/wiki/Wikidata:WikiProject_Gene_Wiki [2]: http://www.obofoundry.org/ [3]: https://github.com/SuLab/scheduled-bots/tree/master/scheduled_bots/ontology [4]: http://jenkins.sulab.org/ On Sun, Sep 29, 2019 at 11:19 AM Houcemeddine A. Turki < [email protected]> wrote: > Dear all, > I thank you for your efforts. As shown in our research paper, many types > of Biomedical entities and relations are not supported by Wikidata. When I > saw OBO Library known to include many CC0 ontologies related to the medical > field, I found that some of the ontologies support missing types of > biomedical items and statements. http://www.ontobee.org/. I knew that > several OBO ontologies have already been integrated to Wikidata. I ask if > there is a work to include all OBO library ontologies to Wikidata. As well, > I ask if there is already a work to automatically update Wikidata if OBO > ontologies are updated. > Yours Sincerely, > Houcemeddine Turki (he/him) > Medical Student, Faculty of Medicine of Sfax, University of Sfax, Tunisia > GLAM and Education Coordinator, Wikimedia TN User Group > Member, Wiki Project Med > Member, WikiIndaba Steering Committee > Member, Wikimedia and Library User Group Steering Committee > ____________________ > +21629499418 > > > -------- Message d'origine -------- > De : "Houcemeddine A. Turki" <[email protected]> > Date : 2019/09/29 11:50 (GMT+01:00) > À : "Houcemeddine A. Turki" <[email protected]> > Objet : Important, Integrating OBO Library into Wikidata database > > Dear all, > I thank you for your efforts. As shown in our research paper, many types > of Biomedical entities and relations are not supported by Wikidata. When I > saw OBO Library known to include many CC0 ontologies related to the medical > field, I found that some of the ontologies support missing types of > biomedical items and statements. http://www.ontobee.org/. I knew that > several OBO ontologies have already been integrated to Wikidata. I ask if > there is a work to include all OBO library ontologies to Wikidata. As well, > I ask if there is already a work to automatically update Wikidata if OBO > ontologies are updated. > Yours Sincerely, > Houcemeddine Turki (he/him) > Medical Student, Faculty of Medicine of Sfax, University of Sfax, Tunisia > GLAM and Education Coordinator, Wikimedia TN User Group > Member, Wiki Project Med > Member, WikiIndaba Steering Committee > Member, Wikimedia and Library User Group Steering Committee > ____________________ > +21629499418 > _______________________________________________ > Wikidata mailing list > [email protected] > https://lists.wikimedia.org/mailman/listinfo/wikidata >
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