When creating patches...

Does the wixpdb method compare the binaries from the two .msi files?  Or, does
it compare the files as they are on the disk?  (My preference is for using .msi
files due to project archiving and other such things).

If it compares the files as they are on the disk, is it wise enough to know when
one .msi has a c:\1.0\whatever.exe, and another .msi has c:\1.1\whatever.exe,
and the whatever.exe files are exactly identical?

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