I was able to figure it out using DefineConstants in a BeforeBuild event to
get the version of the project file and set it as a variable to be used in
Bundle Version:
Bundle.wxs:
<Bundle Name="$(var.ProductName) Bootstrapper
v$(var.BuildVersion)"
Version="$(var.BuildVersion)"
Bootstrapper.wixproj:
<Target Name="BeforeBuild">
<GetAssemblyIdentity
AssemblyFiles="..\MyApp\bin\$(Configuration)\MyApp.exe">
<Output TaskParameter="Assemblies" ItemName="AssemblyVersion" />
</GetAssemblyIdentity>
<PropertyGroup>
<DefineConstants>BuildVersion=%(AssemblyVersion.Version)</DefineConstants>
</PropertyGroup>
</Target>
<Target Name="AfterBuild">
<GetAssemblyIdentity
AssemblyFiles="..\MyApp\bin\$(Configuration)\MyApp.exe">
<Output TaskParameter="Assemblies" ItemName="AssemblyVersion" />
</GetAssemblyIdentity>
<Copy SourceFiles=".\bin\$(Configuration)\$(OutputName).exe"
DestinationFiles=".\bin\$(Configuration)\MyApp.%(AssemblyVersion.Version).exe"
/>
<Delete Files=".\bin\$(Configuration)\$(OutputName).exe" />
</Target>
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