Here is a fragment from a project which sets the AppPath keys. Each action is
in a separate Component with the KeyPath on the registry action, rather than
the Component Directory.

  <Fragment>
    <ComponentGroup Id="AppPath" Directory="FooDir">
      <Component>
        <RegistryValue Root="HKMU"
Key="SOFTWARE\Microsoft\Windows\CurrentVersion\App Paths\Foo.exe"
Value="[FooDir]Foo.exe" Type="string" KeyPath="yes" />
      </Component>
      <Component>
        <RegistryValue Root="HKMU"
Key="SOFTWARE\Microsoft\Windows\CurrentVersion\App Paths\Foo.exe"
Name="Path" Value="[FooDir]" Type="string" KeyPath="yes" />
      </Component>
    </ComponentGroup>
  </Fragment>




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