I have found that right after upgrade to the final, the notifications did not pop up, However, waiting a few hours for the next ping to WP.org allowed it to fix itself.
I'm not sure why it happens like that though..

On Mon, 31 Mar 2008 00:19:05 +1100, m-alo <[EMAIL PROTECTED]> wrote:

After upgrading to 2.5, the automatic notification of upgrades for the
installed plugins no longer work?!? It worked on RC2.

/Michael.
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