One further note, using the version of wsdl4j.jar that came with the stack that I'm using (caBig, which is based on Globus 4.0.3), I get the following walkback:

Exception in thread "Thread-4" java.lang.NoSuchMethodError: javax.wsdl.xml.WSDLLocator.getImportReader(Ljava/lang/String;Ljava/lang/String;)Ljava/io/Reader;
        at org.apache.wsif.schema.Parser.getImportedSchemas(Unknown Source)
        at org.apache.wsif.schema.Parser.getTypesSchemas(Unknown Source)
        at org.apache.wsif.schema.Parser.getTypesSchemas(Unknown Source)
        at org.apache.wsif.schema.Parser.getTypesSchemas(Unknown Source)
        at org.apache.wsif.schema.Parser.getAllSchemaTypes(Unknown Source)
at edu.mit.broad.genepattern.cagrid.modulegenerator.WebServiceInterface.parseSchema(WebServiceInterface.java:584) at edu.mit.broad.genepattern.cagrid.modulegenerator.ui.ParameterTableModel$1.run(ParameterTableModel.java:82)

It isn't clear to me which version of wsdl4j is in caBig 1.0. The contents of the Manifest.MF file in this wsdl4j.jar is as follows:

Manifest-Version: 1.0
Ant-Version: Apache Ant 1.5.4
Created-By: 1.3.1_11-b02 (Sun Microsystems Inc.)
Specification-Title: JWSDL
Specification-Version: 1.1
Specification-Vendor: IBM (Java Community Process)
Implementation-Title: WSDL4J
Implementation-Version: 1.5
Implementation-Vendor: IBM


jnedzel wrote:
Alek:

With wsdl4j-20021124.jar (which comes with wsif-2.0), I get a NoClassDefFoundError for javax.wsdl.extensions.AttributeExtensive. here's the walkback:

Exception in thread "Thread-2" java.lang.NoClassDefFoundError: javax/wsdl/extensions/AttributeExtensible at org.apache.axis.message.addressing.handler.AddressingHandler.processClientRequest(Address
ingHandler.java:219)
at org.globus.wsrf.handlers.AddressingHandler.processClientRequest(AddressingHandler.java:69
)
at org.apache.axis.message.addressing.handler.AddressingHandler.invoke(AddressingHandler.jav
a:108)
at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
        at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
        at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
        at org.apache.axis.client.AxisClient.invoke(AxisClient.java:127)
        at org.apache.axis.client.Call.invokeEngine(Call.java:2727)
        at org.apache.axis.client.Call.invoke(Call.java:2710)
        at org.apache.axis.client.Call.invoke(Call.java:2386)
        at org.apache.axis.client.Call.invoke(Call.java:2309)
        at org.apache.axis.client.Call.invoke(Call.java:1766)
at org.oasis.wsrf.properties.QueryResourcePropertiesSOAPBindingStub.queryResourceProperties(
QueryResourcePropertiesSOAPBindingStub.java:415)
at gov.nih.nci.cagrid.metadata.ResourcePropertyHelper.issueRPQuery(ResourcePropertyHelper.ja
va:238)
at gov.nih.nci.cagrid.metadata.ResourcePropertyHelper.queryResourceProperties(ResourceProper
tyHelper.java:87)
at gov.nih.nci.cagrid.discovery.client.DiscoveryClient.discoverByFilter(DiscoveryClient.java
:650)
at gov.nih.nci.cagrid.discovery.client.DiscoveryClient.getAllServices(DiscoveryClient.java:1
28)
at edu.mit.broad.genepattern.cagrid.modulegenerator.CaGridUtils.getServices(CaGridUtils.java
:24)
at edu.mit.broad.genepattern.cagrid.modulegenerator.ui.ServiceJList.getCaGridServices(Servic
eJList.java:11)
at edu.mit.broad.genepattern.cagrid.modulegenerator.ui.ServiceJList.access$000(ServiceJList.
java:6)
at edu.mit.broad.genepattern.cagrid.modulegenerator.ui.ServiceJList$1.run(ServiceJList.java:
44)

Using wsdl4. 1.6.1, I get farther in the code, with Parser.getAllSchemaTypes now throwing a ClassCastException:

Exception returned for service java.lang.ClassCastException: com.ibm.wsdl.extensions.schema.SchemaImpl cannot be cast to javax.wsdl.extensions.UnknownExtensibility





Aleksander Slominski wrote:
could you check what is the version of

lib/caGrid-1.0/wsdl4j.jar

could you try to replace it with wsdl4j that comes with wsif and see what happens?

best,

alek



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Jared Nedzel
Cancer Genomics Informatics
Broad Institute
7 Cambridge Center
Cambridge, MA 02142

617-324-4825
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