John, Sounds like a purely serial port issue. I don't see it in the latest r3585 on Fedora Core 19.
First check the serial settings on the configuration tab, make sure they're the same as what fldigi uses. You may also want to turn off fldigi, otherwise there could be contention for the port. -- P.J. "Josh" Rovero Ham Radio: KK1D http://www.roveroresearch.org http://www.roveroresearch.info
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