You are missing prerequisites. X10 requires gcc 4.2 or later.
Igor
mohammed elsaeedy <mohammed.elsae...@kaust.edu.sa> wrote on 07/22/2010
04:00:34 PM:
> Dear Igor,
>
>
> Sorry for that, yes you were right, I didn't really attach all of
the
> error, my mistake.... so again, I
> tried to compile the X10 2.0.4 and here is what I get at the end:
> ...................................
> ...................................
> ...................................
> ...................................
> [exec] g++ -g -ansi -pedantic -Wall -Wextra -Wno-long-long
> -Wno-unused-parameter -pthread -DX10_USE_BDWGC -I. -I../x10rt/include
> -I./bdwgc/install/include -Igen -g -ansi -pedantic -Wall -Wextra
> -Wno-long-long -Wno-unused-parameter -pthread -DX10_USE_BDWGC -I.
> -I../x10rt/include -I./bdwgc/install/include -Igen -shared -fPIC -c
> gen/x10/array/BaseDist.cc -o gen/x10/array/BaseDist.o
> [exec] g++ -g -ansi -pedantic -Wall -Wextra -Wno-long-long
> -Wno-unused-parameter -pthread -DX10_USE_BDWGC -I. -I../x10rt/include
> -I./bdwgc/install/include -Igen -g -ansi -pedantic -Wall -Wextra
> -Wno-long-long -Wno-unused-parameter -pthread -DX10_USE_BDWGC -I.
> -I../x10rt/include -I./bdwgc/install/include -Igen -shared -fPIC -c
> gen/x10/array/BaseRegion.cc -o gen/x10/array/BaseRegion.o
> [exec] gen/x10/array/BaseRegion.cc: In member function ‘virtual
> x10_boolean
x10::array::BaseRegion::equals(x10aux::ref<x10::lang::Any>)’:
> [exec] gen/x10/array/BaseRegion.cc:185: internal compiler error: in
> cp_expr_size, at cp/cp-objcp-common.c:101
> [exec] Please submit a full bug report,
> [exec] with preprocessed source if appropriate.
> [exec] See <URL:http://bugs.opensuse.org> for instructions.
> [exec] make[1]: *** [gen/x10/array/BaseRegion.o] Error 1
> [exec] make[1]: *** Waiting for unfinished jobs....
> [exec] gen/x10/array/BaseDist.cc: In member function ‘virtual
> x10aux::ref<x10::array::Region>
> x10::array::BaseDist::get(x10::lang::Place)’:
> [exec] gen/x10/array/BaseDist.cc:296: internal compiler error: in
> cp_expr_size, at cp/cp-objcp-common.c:101
> [exec] Please submit a full bug report,
> [exec] with preprocessed source if appropriate.
> [exec] See <URL:http://bugs.opensuse.org> for instructions.
> [exec] make[1]: *** [gen/x10/array/BaseDist.o] Error 1
> [exec] make[1]: Leaving directory
>
`/home/cluster/t1221/lu26xut/x10-2.0.4_linux_x86_src/x10.runtime/src-cpp'
> [exec] make: *** [gen/all-o-generated] Error 2
>
> BUILD FAILED
>
/home/cluster/t1221/lu26xut/x10-2.0.4_linux_x86_src/x10.dist/build.xml:217:
> The following error occurred while executing this line:
>
/home/cluster/t1221/lu26xut/x10-2.0.4_linux_x86_src/x10.runtime/build.xml:294:
> exec returned: 2
>
>
> any help please??
>
> On Thu, Jul 22, 2010 at 3:43 PM, Igor Peshansky <ig...@us.ibm.com>
wrote:
>
> > Mohammed,
> >
> > Either you did not show us the whole error message, or you are missing
one
> > of
> > the prerequisites. According to line 294 of the 2.0.4 source, you may
not
> > have the make executable in your path.
> >
> > FYI, you can probably skip most of the first 4 minutes 27 seconds of
the
> > build
> > by not doing a clean on subsequent builds (just "ant dist").
> >
> > The default build will also build X10RT. You can add
"-DX10RT_MPI=true"
> > to
> > the ant command line to have it build the MPI version of X10RT.
> > Igor
> >
> > mohammed elsaeedy <mohammed.elsae...@kaust.edu.sa> wrote on 07/22/2010
> > 03:04:10 PM:
> >
> > > Dear Igor and Yoav,
> > >
> > > Thank you for your reply and help. When I tried to use the command
> > "ant
> > > -Davailable.procs=4 distclean dist" to build the source code on the
> > cluster,
> > > the build fails giving me the following error eventually after 4
mins
> > and 27
> > > secs:
> > >
> > > BUILD FAILED
> > >
> >
/home/cluster/t1221/lu26xut/x10-2.0.4_linux_x86_src/x10.dist/build.xml:217:
> > > The following error occurred while executing this line:
> > >
> >
> >
/home/cluster/t1221/lu26xut/x10-2.0.4_linux_x86_src/x10.runtime/build.xml:294:
> > > exec returned: 2
> > >
> > > and again I'm compiling the source code for x10 2.0.4 !!
> > > so it has to do with the runtime environment, although, I recall to
> > compile
> > > the X10RT I need to do independently (it has to do with my choice of
> > > communication flavor)
> > >
> > > So whats the problem??
> > >
> > >
> > > Thank you again,
> > > Mohammed El Sayed @ KAUST
> > >
> > > On Thu, Jul 22, 2010 at 2:35 PM, Igor Peshansky <ig...@us.ibm.com>
> > wrote:
> > >
> > > > Indeed -- good point, Yoav.
> > > >
> > > > Mohammed, if you run with "-report postcompile=1", the compiler
will
> > > > tell you exactly how it's invoking the post-compiler, and you can
then
> > > > re-run the exact post-compilation command to see the output in
your
> > > > shell.
> > > > Igor
> > > >
> > > > Yoav Zibin <yoav.zi...@gmail.com> wrote on 07/22/2010 02:29:25 PM:
> > > >
> > > > > I think that's what happen:
> > > > > The X10 compiler created the C++ files, and then it runs the C++
> > > > compiler
> > > > > (we call it a post-compiler) from within Java, and if the return
> > code
> > > > was
> > > > > not zero, then it outputs the C++ compiler's output. And your
C++
> > > > compiler
> > > > > apparently created a LOT of output (that caused the
OutOfMemory).
> > > > > You can use "-c" to specify another post-compiler.
> > > > >
> > > > > Runtime runtime = Runtime.getRuntime();
> > > > > Process proc = runtime.exec(cxxCmd, null,
> > > > > options.output_directory);
> > > > >
> > > > > InputStreamReader err = new
> > > > > InputStreamReader(proc.getErrorStream());
> > > > >
> > > > > String output = null;
> > > > > try {
> > > > > char[] c = new char[72];
> > > > > int len;
> > > > > StringBuffer sb = new StringBuffer();
> > > > > while((len = err.read(c)) > 0) {
> > > > > sb.append(String.valueOf(c, 0, len)); *//
threw
> > a
> > > > > OutOfMemoryError*
> > > > > }
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > On Thu, Jul 22, 2010 at 2:17 PM, mohammed elsaeedy <
> > > > > mohammed.elsae...@kaust.edu.sa> wrote:
> > > > >
> > > > > > Dear Igor,
> > > > > >
> > > > > >
> > > > > > Well I did as you said, I took the 2.0.4 source code and I
> > > > compiled
> > > > > > over my laptop first (32 bit), and I linked the environment
> > variables
> > > > to
> > > > > > the "bin" of the compiled source code, and it worked just
> > perfectly.
> > > > "ant
> > > > > > squeakyclean dist"
> > > > > >
> > > > > > When I do the same thing over the cluster, I was able to
compile
> > it
> > > > and I
> > > > > > set the environment variables to the "bin", but when i simply
try
> > to
> > > > > > compile a hello world "x10c++ -o hello hello.x10" it begins to
> > compile
> > > > the
> > > > > > classes for X10, and generating this weird "x10" folder in my
> > home.
> > > > > > but then it stops for an error, "Exception in thread "main"
> > > > > > java.lang.OutOfMemoryError: Java heap space"
> > > > > > I do it again and this time I see what it was compiling
before:
> > > > > >
> > > > > > Not recompiling: x10.lang.Runtime
> > > > > > Not recompiling: x10.lang.Place
> > > > > > Not recompiling: x10.lang._
> > > > > > Not recompiling: x10.array.Dist
> > > > > > Not recompiling: x10.array.Point
> > > > > > Not recompiling: x10.array.Region
> > > > > > ...............
> > > > > > ...............
> > > > > > ...............
> > > > > > ...............
> > > > > > Not recompiling: x10.array.Xform
> > > > > > Not recompiling: x10.array.PolyXform
> > > > > > Not recompiling: x10.io.EOFException
> > > > > > Not recompiling: x10.io.ReaderIterator
> > > > > > Not recompiling: x10.compiler.NativeCPPInclude
> > > > > > Not recompiling: x10.compiler.NativeCPPOutputFile
> > > > > > Not recompiling: x10.compiler.NativeCPPCompilationUnit
> > > > > > Not recompiling: x10.compiler.StackAllocate
> > > > > > Not recompiling: x10.compiler.ByRef
> > > > > > Exception in thread "main" java.lang.OutOfMemoryError: Java
heap
> > space
> > > > > > at java.util.Arrays.copyOf(Arrays.java:2882)
> > > > > > at
> > > > > >
> > > > > >
> > > >
> > > >
> >
> >
java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:100)
> > > > > > at
> > > > > >
> > java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:390)
> > > > > > at java.lang.StringBuffer.append(StringBuffer.java:224)
> > > > > > at
> > > > > >
> > x10cpp.visit.X10CPPTranslator.doPostCompile(X10CPPTranslator.java:472)
> > > > > > at
> > > >
x10cpp.visit.X10CPPTranslator.postCompile(X10CPPTranslator.java:444)
> > > > > > at
> > > > > >
> > > > > > x10cpp.ExtensionInfo$X10CPPScheduler$1.
> > > > > invokePostCompiler(ExtensionInfo.java:157)
> > > > > > at
polyglot.visit.PostCompiled.runTask(PostCompiled.java:56)
> > > > > > at polyglot.frontend.Scheduler.runPass(Scheduler.java:325)
> > > > > > at
> > polyglot.frontend.AbstractGoal_c.run(AbstractGoal_c.java:102)
> > > > > > at polyglot.types.LazyRef_c.get(LazyRef_c.java:45)
> > > > > > at
polyglot.frontend.AbstractGoal_c.run(AbstractGoal_c.java:49)
> > > > > > at polyglot.types.LazyRef_c.get(LazyRef_c.java:45)
> > > > > > at polyglot.frontend.Scheduler.attempt(Scheduler.java:237)
> > > > > > at
> > polyglot.frontend.Scheduler.runToCompletion(Scheduler.java:174)
> > > > > > at
> > polyglot.frontend.Scheduler.runToCompletion(Scheduler.java:160)
> > > > > > at polyglot.frontend.Compiler.compile(Compiler.java:166)
> > > > > > at
polyglot.frontend.Compiler.compileFiles(Compiler.java:134)
> > > > > > at polyglot.main.Main.start(Main.java:119)
> > > > > > at polyglot.main.Main.start(Main.java:74)
> > > > > > at polyglot.main.Main.main(Main.java:166)
> > > > > >
> > > > > >
> > > > > > I tried to increase the heap size to min 2G and max 3G by
using "
> > > > alias
> > > > > > java='java -Xms2g -Xmx3g' "
> > > > > > but it still does not work.
> > > > > >
> > > > > > Anyway why is it generating these files? That didn't even
happen
> > on my
> > > > > > laptop !!!
> > > > > >
> > > > > >
> > > > > > On Thu, Jul 22, 2010 at 10:47 AM, Igor Peshansky
> > <ig...@us.ibm.com>
> > > > wrote:
> > > > > >
> > > > > > > mohammed elsaeedy <mohammed.elsae...@kaust.edu.sa> wrote on
> > > > 07/22/2010
> > > > > > > 09:28:44 AM:
> > > > > > >
> > > > > > > > Dear List,
> > > > > > > >
> > > > > > > > Now, I've implemented several parallel applications by
> > using
> > > > X10,
> > > > > > > and
> > > > > > > > they work very well locally on my machine (32 bit) , but
now I
> > > > want to
> > > > > > > run
> > > > > > > > it over a cluster to
> > > > > > > > evaluate the true performance of intra and inter
parallelism,
> > so I
> > > > set
> > > > > > > up
> > > > > > > > the PATH variables on my account in the cluster (Opteron
> > x86_64)
> > > > with
> > > > > > > the
> > > > > > > > release of X10 2.0.4,
> > > > > > > >
> > Linux/x86_64<http://sourceforge.net/projects/x10/files/x10/2.0.
> > > > > > > > 4/x10-2.0.4_linux_x86_64.tgz/download>
> > > > > > > > but then every time I try to compile an application over
the
> > > > cluster it
> > > > > > > > gives me the following error:
> > > > > > > >
> > > > > > > > <cluster path>/x10-2.0.4_linux_x86/lib/libx10.so: file not
> > > > recognized:
> > > > > > > File
> > > > > > > > format not recognized
> > > > > > > > collect2: ld returned 1 exit status
> > > > > > > > x10c++: Non-zero return code: 1
> > > > > > > > 2 errors.
> > > > > > > >
> > > > > > > > why is that? Do you suggest to download the X10 source
code
> > and
> > > > compile
> > > > > > > it
> > > > > > > > over the cluster? and if so, how to do that?
> > > > > > >
> > > > > > > Hi, Mohammed,
> > > > > > >
> > > > > > > Sorry about that.
> > > > > > >
> > > > > > > I'm not sure why you are not able to use the x86_64
pre-built
> > > > binary, and
> > > > > > > we'll work with you to debug this issue off-list.
> > > > > > >
> > > > > > > However, compiling your own version should definitley get
you
> > going.
> > > > > > > Please look at and follow the build instructions
> > > > > > > (http://x10.codehaus.org/Building+from+SVN+head and
> > > > > > >
> > > > > > >
> > > > > >
> > http://x10.codehaus.org/X10RT+Implementations#X10RTImplementations-
> > > > > AugmentingaprebuiltX10ReleasewiththeMPIversionofX10RT
> > > > > > > ).
> > > > > > > You should be able to build the MPI binary fairly easily
without
> > > > > > depending
> > > > > > > on anything we've built (which may be corrupt, according to
your
> > > > report
> > > > > > > above). Let us know if you run into any problems.
> > > > > > > Igor
--
Igor Peshansky (note the spelling change!)
IBM T.J. Watson Research Center
X10: Parallel Productivity and Performance (http://x10-lang.org/)
XJ: No More Pain for XML's Gain (http://www.research.ibm.com/xj/)
"I hear and I forget. I see and I remember. I do and I understand" --
Confucius
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