Hello all,
I have been trying to run a binary ARPCLIM-mvapich-gcc450-debug3
(compiled by MVAPICH) using
mpirun -np 2 -machinefile file ARPCLIM-mvapich-gcc450-debug3
But, I get the following error.
------
OASIS3 environment variable :
OASIS3DEBUGLEVEL environment variable :
LOASIS3,IOASIS3LVL,IOASIS3DEBUGLVL = F 0 0
LOASIS3,IOASIS3LVL,IOASIS3DEBUGLVL = F 0 0
MPL_INIT : LMPLUSERCOMM not used
Communicator : ********
MPL_INIT : LMPLUSERCOMM not used
Communicator : ********
MPL_INIT : LMPLUSERCOMM not used
MPL_INIT : LMPLUSERCOMM not used
Communicator : ********
Communicator : ********
signal_drhook(SIGABRT=6): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGBUS=7): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGSEGV=11): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGILL=4): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGSTKFLT=16): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGFPE=8): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGTRAP=5): New handler installed at 0x171d73f; old
preserved at 0x0
MPL_GROUPS_CREATE: MPI_CART_CREATE 12 FROM PROCESSOR 2
signal_drhook(SIGINT=2): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGQUIT=3): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGTERM=15): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGXCPU=24): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGSYS=31): New handler installed at 0x171d73f; old
preserved at 0x0
Invalid argument in process 2
MPL_GROUPS_CREATE: MPI_CART_CREATE 12 FROM PROCESSOR 1
Invalid argument in process 1
[myproc#2,tid#1,pid#-1,signal#11(SIGSEGV)]: Received signal :: 0MB
(heap), 0MB (rss), 0MB (stack), 0 (paging), nsigs 1, time 0.00
[myproc#1,tid#1,pid#-1,signal#11(SIGSEGV)]: Received signal :: 0MB
(heap), 0MB (rss), 0MB (stack), 0 (paging), nsigs 1, time 0.00
Activating SIGALRM=14 and calling alarm(10), time = 0.00
JSETSIG: sl->active = 0
Activating SIGALRM=14 and calling alarm(10), time = 0.00
JSETSIG: sl->active = 0
signal_drhook(SIGALRM=14): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGALRM=14): New handler installed at 0x171d73f; old
preserved at 0x0
tid#1 starting drhook traceback, time = 0.00
tid#1 starting drhook traceback, time = 0.00
tid#1 starting sigdump traceback, time = 0.00
[gdb__sigdump] : Received signal#11(SIGSEGV), pid=-1
tid#1 starting sigdump traceback, time = 0.00
[gdb__sigdump] : Received signal#11(SIGSEGV), pid=-1
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:826 :
ARPCLIM-mvapich-gcc450-debug3 [0x171d724]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:1003 :
ARPCLIM-mvapich-gcc450-debug3 [0x171dc2f]
<Unknown> :
libpthread.so.0 [0x30e320de70]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/mpl_groups.F90:65 :
ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sumpini.F90:274 :
ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/su0yoma.F90:163 :
ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/cnt0.F90:143 :
ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/master.F90:35 :
ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> :
libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:826 :
ARPCLIM-mvapich-gcc450-debug3 [0x171d724]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:1003 :
ARPCLIM-mvapich-gcc450-debug3 [0x171dc2f]
<Unknown> :
libpthread.so.0 [0x30e320de70]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/mpl_groups.F90:65 :
ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sumpini.F90:274 :
ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/su0yoma.F90:163 :
ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/cnt0.F90:143 :
ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/master.F90:35 :
ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> :
libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
[LinuxTraceBack] : End of backtrace(s)
Done tracebacks, calling exit with sig=11, time = 0.10
ABOR1 CALLED
Dr.Hook calls ABOR1 ...
ABORT! 2 Dr.Hook calls ABOR1 ...
[LinuxTraceBack] : End of backtrace(s)
Done tracebacks, calling exit with sig=11, time = 0.10
ABOR1 CALLED
Dr.Hook calls ABOR1 ...
ABORT! 1 Dr.Hook calls ABOR1 ...
MPL_ABORT: CALLED FROM PROCESSOR 1 THRD 1
MPL_ABORT: THRD 1 Dr.Hook calls ABOR1 ...
MPL_ABORT: CALLED FROM PROCESSOR 2 THRD 1
MPL_ABORT: THRD 1 Dr.Hook calls ABOR1 ...
SDL_TRACEBACK: Calling LINUX_TRBK, THRD = 1
SDL_TRACEBACK: Calling LINUX_TRBK, THRD = 1
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:172 :
ARPCLIM-mvapich-gcc450-debug3 [0x178244e]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sdl_module.F90:71 :
ARPCLIM-mvapich-gcc450-debug3 [0x17280b0]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_abort_mod.F90:36 : ARPCLIM-mvapich-gcc450-debug3 [0x1710927]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
abor1.F90:41 : ARPCLIM-mvapich-gcc450-debug3 [0x1718d72]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:
1007 : ARPCLIM-mvapich-gcc450-debug3 [0x171dc90]
<Unknown> : libpthread.so.0 [0x30e320de70]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_groups.F90:65 : ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
sumpini.F90:274 : ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
su0yoma.F90:163 : ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
cnt0.F90:143 : ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
master.F90:35 : ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> : libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
[LinuxTraceBack] : End of backtrace(s)
SDL_TRACEBACK: Done LINUX_TRBK, THRD = 1
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:172 :
ARPCLIM-mvapich-gcc450-debug3 [0x178244e]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sdl_module.F90:71 :
ARPCLIM-mvapich-gcc450-debug3 [0x17280b0]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_abort_mod.F90:36 : ARPCLIM-mvapich-gcc450-debug3 [0x1710927]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
abor1.F90:41 : ARPCLIM-mvapich-gcc450-debug3 [0x1718d72]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:
1007 : ARPCLIM-mvapich-gcc450-debug3 [0x171dc90]
<Unknown> : libpthread.so.0 [0x30e320de70]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_groups.F90:65 : ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
sumpini.F90:274 : ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
su0yoma.F90:163 : ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
cnt0.F90:143 : ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
master.F90:35 : ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> : libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
[LinuxTraceBack] : End of backtrace(s)
SDL_TRACEBACK: Done LINUX_TRBK, THRD = 1
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
=====================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= EXIT CODE: 256
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
=====================================================================================
---------
Many thanks for your help,
Mouhamad Al sayed ali
post-doctoral in applied mathematics
