I am setting up a new lab machine (x86-64) with two ethernet interfaces (one 
on-board, and one in a PCI slot).  The secondary PCI card works fine under 
standard linux, but does not work when running a xenomai-patched kernel.  In 
the latter case, the OS brings up the eth1 interface, but I am unable to ping 
anything.  No bytes are received as shown via 'ifconfig':

eth1      Link encap:Ethernet  HWaddr 90:e2:ba:1b:61:70
          inet addr:192.168.12.21  Bcast:192.168.12.255  Mask:255.255.255.0
          inet6 addr: fe80::92e2:baff:fe1b:6170/64 Scope:Link
          UP BROADCAST RUNNING MULTICAST  MTU:1500  Metric:1
          RX packets:0 errors:0 dropped:84 overruns:0 frame:0
          TX packets:34 errors:0 dropped:0 overruns:0 carrier:0
          collisions:0 txqueuelen:1000
          RX bytes:0 (0.0 B)  TX bytes:8040 (8.0 KB)

This machine is a quad-core Xeon W3520 @ 2.67GHz running Ubuntu 12.04.  I 
started out with a custom-built 3.5.7/xenomai-2.6.2.1 kernel package using 
Ubuntu's config as a starting point.  When that didn't work, I rebuilt a 
vanilla 3.5.7 kernel using the same configuration.  The ethernet worked fine 
under that kernel, so it seems be a xenomai/i-pipe related issue.  I then built 
a kernel using code from the ipipe-core-3.5.7 and xenomai-2.6 git repositories, 
but this did not improve things.  I don't see any kernel panics, but I see a 
couple of spurious interrupt messages in the syslog:

[   28.585160] I-pipe: spurious interrupt 32
[   68.537855] I-pipe: spurious interrupt 32

That is not the IRQ associated with the ethernet card.  I have seen this same 
message on other machines, but I have not tracked down the cause.  Here is the 
output of 'sudo lcpci -vv' for the problematic ethernet card under xenomai:

06:04.0 Ethernet controller: Intel Corporation 82541PI Gigabit Ethernet 
Controller (rev 05)
        Subsystem: Intel Corporation PRO/1000 GT Desktop Adapter
        Control: I/O+ Mem+ BusMaster+ SpecCycle- MemWINV+ VGASnoop- ParErr- 
Stepping- SERR+ FastB2B- DisINTx-
        Status: Cap+ 66MHz+ UDF- FastB2B- ParErr- DEVSEL=medium >TAbort- <TAbort- 
<MAbort- >SERR- <PERR- INTx+
        Latency: 64 (63750ns min), Cache Line Size: 64 bytes
        Interrupt: pin A routed to IRQ 16
        Region 0: Memory at f3bc0000 (32-bit, non-prefetchable) [size=128K]
        Region 1: Memory at f3be0000 (32-bit, non-prefetchable) [size=128K]
        Region 2: I/O ports at ccc0 [size=64]
        Expansion ROM at f3c00000 [disabled] [size=128K]
        Capabilities: [dc] Power Management version 2
                Flags: PMEClk- DSI+ D1- D2- AuxCurrent=0mA 
PME(D0+,D1-,D2-,D3hot+,D3cold+)
                Status: D0 NoSoftRst- PME-Enable- DSel=0 DScale=1 PME-
        Capabilities: [e4] PCI-X non-bridge device
                Command: DPERE- ERO+ RBC=512 OST=1
                Status: Dev=00:00.0 64bit- 133MHz- SCD- USC- DC=simple 
DMMRBC=2048 DMOST=1 DMCRS=8 RSCEM- 266MHz- 533MHz-
        Kernel driver in use: e1000
        Kernel modules: e1000

On a working kernel, the output is similar, except for the last character in 
the status line:

        Status: Cap+ 66MHz+ UDF- FastB2B- ParErr- DEVSEL=medium >TAbort- <TAbort- 
<MAbort- >SERR- <PERR- INTx-

This is the output of /proc/interrupts under xenomai:

            CPU0       CPU1       CPU2       CPU3       CPU4       CPU5       
CPU6       CPU7
   0:         77          0          0          0          0          0         
 0          0   IO-APIC-edge      timer
   1:          3          0          0          0          0          0         
 0          0   IO-APIC-edge      i8042
   7:          1          0          0          0          0          0         
 0          0   IO-APIC-edge      parport0
   8:          1          0          0          0          0          0         
 0          0   IO-APIC-edge      rtc0
   9:          0          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   acpi
  12:          4          0          0          0          0          0         
 0          0   IO-APIC-edge      i8042
  16:         38          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   uhci_hcd:usb3, eth1
  17:        200       5351        351          0          0          0         
 0          0   IO-APIC-fasteoi   uhci_hcd:usb4, uhci_hcd:usb7
  18:          0          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   uhci_hcd:usb8
  22:          3          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   ehci_hcd:usb1, uhci_hcd:usb5
  23:         60          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   ehci_hcd:usb2, uhci_hcd:usb6
  34:        113        131          0          0          0          0         
 0          0   IO-APIC-fasteoi   snd_hda_intel
  66:       6177          0       9890          0          0          0         
 0          0   PCI-MSI-edge      ahci
  67:        245          0          0        129          0          0         
 0          0   PCI-MSI-edge      snd_hda_intel
  68:         55          0          0          0          0       5804         
 0          0   PCI-MSI-edge      eth0
 NMI:         16         11         17          9         15         19         
14         19   Non-maskable interrupts
 LOC:      25255      14281      21555      14835      16608      18121      
14736      19355   Local timer interrupts
 SPU:          0          0          0          0          0          0         
 0          0   Spurious interrupts
 PMI:         16         11         17          9         15         19         
14         19   Performance monitoring interrupts
 IWI:          0          0          0          0          0          0         
 0          0   IRQ work interrupts
 RTR:          7          0          0          0          0          0         
 0          0   APIC ICR read retries
 RES:      40927      39497      33477      29679       5827       6441       
7713       5641   Rescheduling interrupts
 CAL:        242        360        425        393        418        416        
393        339   Function call interrupts
 TLB:        743        739        826        819        659       1038       
1074       1160   TLB shootdowns
 TRM:          0          0          0          0          0          0         
 0          0   Thermal event interrupts
 THR:          0          0          0          0          0          0         
 0          0   Threshold APIC interrupts
 MCE:          0          0          0          0          0          0         
 0          0   Machine check exceptions
 MCP:          4          4          4          4          4          4         
 4          4   Machine check polls
 ERR:          0
 MIS:          0

On a working kernel, I get this:

            CPU0       CPU1       CPU2       CPU3       CPU4       CPU5       
CPU6       CPU7
   0:         76          0          0          0          0          0         
 0          0   IO-APIC-edge      timer
   1:          3          0          0          0          0          0         
 0          0   IO-APIC-edge      i8042
   7:          1          0          0          0          0          0         
 0          0   IO-APIC-edge      parport0
   8:          1          0          0          0          0          0         
 0          0   IO-APIC-edge      rtc0
   9:          0          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   acpi
  12:          4          0          0          0          0          0         
 0          0   IO-APIC-edge      i8042
  16:         35          0          0          0       1032          0         
 0          0   IO-APIC-fasteoi   uhci_hcd:usb3, eth1
  17:         86        393        460          0          0          0         
 0          0   IO-APIC-fasteoi   uhci_hcd:usb4, uhci_hcd:usb7
  18:          0          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   uhci_hcd:usb8
  22:          3          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   ehci_hcd:usb1, uhci_hcd:usb5
  23:         61          0          0          0          0          0         
 0          0   IO-APIC-fasteoi   ehci_hcd:usb2, uhci_hcd:usb6
  34:        193        232          0          0          0          0         
 0          0   IO-APIC-fasteoi   snd_hda_intel
  66:       6247          0       8704          0          0          0         
 0          0   PCI-MSI-edge      ahci
  67:        245          0          0         57          0          0         
 0          0   PCI-MSI-edge      snd_hda_intel
  68:         80          0          0          0          0      11328         
 0          0   PCI-MSI-edge      eth0
 NMI:          7         10         11          9         14         17         
14         14   Non-maskable interrupts
 LOC:      30352       9408      12686       7699       6434       9800       
8633       6039   Local timer interrupts
 SPU:          0          0          0          0          0          0         
 0          0   Spurious interrupts
 PMI:          7         10         11          9         14         17         
14         14   Performance monitoring interrupts
 IWI:          0          0          0          0          0          0         
 0          0   IRQ work interrupts
 RTR:          7          0          0          0          0          0         
 0          0   APIC ICR read retries
 RES:      12970       1023        383        210        176        123        
114        157   Rescheduling interrupts
 CAL:        152        385        395        397        371        388        
404        389   Function call interrupts
 TLB:        579        604        677        666        925        763       
1179       1090   TLB shootdowns
 TRM:          0          0          0          0          0          0         
 0          0   Thermal event interrupts
 THR:          0          0          0          0          0          0         
 0          0   Threshold APIC interrupts
 MCE:          0          0          0          0          0          0         
 0          0   Machine check exceptions
 MCP:          8          8          8          8          8          8         
 8          8   Machine check polls

So, it seems to me that some IRQ 16 interrupts are not getting through to linux.

Can anyone tell me how to proceed in debugging this issue?  What other 
information do you need?

Thanks,

-Jeff

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