On 01/25/2011 09:14 PM, Natalia Shilenkova wrote:
What would be the appropriate course of action to resolve this issue. Is
there a way to extract the binary file in another way (not XML-based) so
that I manually delete the affected entry.
XIndice version: v1.1b5-dev
Andre,
Are you trying to retrieve the corrupted document from the database or
just delete it? If it is the latter, then the simplest way, I think, is to
create new empty collection and load the existing documents.
Yes, I thought already that is probably the way to go. It will be
cumbersome.
Yes, it can take a while, depending on the size of a collection... I
think it may be possible to delete the corrupted entry using low-level
API that doesn't try to interpret the data, but I would strongly
recommend rebuilding the collection anyway, just to be sure that there
are no hidden problems.
On the other hand, the way I've set things up is that there are related
XMl documents in the database with names (ids) likes 23-0.0, 23-0.1,
23-0.2 etc So, I can retrieve groups of related XML documents with one
command. If I can insert them also as groups (collection) then it going
to be a lot easier.
I am pretty sure that I going to rebuild the collection. Looks more
straightforward. It could be accomplished with a simple script.
Thanks,
Andre
Regards,
Natalia
Does the exception for XMLCompressedInput happen for the same collection
and the same corrupt document or for some unrelated backup collection?
The backup is fine. It was created before the crash. The entry in the db
itself is corrupted. I manage to 'isolate' the corrupted entry such that
users are not anymore affected.
Regards,
Natalia
--
Andre H. Juffer | Phone: +358-8-553 1161
Biocenter Oulu and | Fax: +358-8-553-1141
Department of Biochemistry | Email: [email protected]
University of Oulu, Finland | WWW: www.biochem.oulu.fi/Biocomputing/
StruBioCat | WWW: www.strubiocat.oulu.fi
NordProt | WWW: www.nordprot.org
Triacle Biocomputing | WWW: www.triacle-bc.com
--
Andre H. Juffer | Phone: +358-8-553 1161
Biocenter Oulu and | Fax: +358-8-553-1141
Department of Biochemistry | Email: [email protected]
University of Oulu, Finland | WWW: www.biochem.oulu.fi/Biocomputing/
StruBioCat | WWW: www.strubiocat.oulu.fi
NordProt | WWW: www.nordprot.org
Triacle Biocomputing | WWW: www.triacle-bc.com
