The "(//. | //@* | //namespace::*)" part simply selects all nodes in the document and then the condition inside square brackets selects the desired nodes. This way of XPath transform processing is described in XMLDSig specification [1]. Unfortunately, I don't know a simple way to achieve the result you want using the XPath transform. However, there is a new XPath2 transform [2] and xmlsec does support it. Using this transform you'll easily get what you want because it does not require implicit "square brackets". The downside is that less toolkits support it thus you might have interop problems with non-xmlsec based implementations.
Aleksey
[1] http://www.w3.org/TR/xmldsig-core/#sec-XPath [2] http://www.w3.org/TR/xmldsig-filter2/
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