When I verify, I am aware that I will use the X509Certificate node for
verifying but I also want to parse the X509Certificate separately and
confirm it is the certificate I expect - the way I am doing this uses
XPath and I believed I could search for //X509Certificate however this
yields no results.


You are forgetting about namespaces:

http://xmlsoft.org/examples/index.html#XPath
http://xmlsoft.org/html/libxml-xpathInternals.html#xmlXPathRegisterNs

BTW, the certificate used to verify the signature is
available in the key object returned in the xmlDSigCtx
structure.


Aleksey


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