Hello-- > > Thanks for the reply, but even when commenting out the rigid regions > angl, impr, and cdih blowup. So I went back to using the the > dna_refi as a template for subsequent refinement.
I wonder what the difference is. > I think that is > it working ok, in the attached script I am reading in a structure > calculated with the RDCs from the upper and lower stems and applying > only the iminos from the entire RNA but I do not understand why ANI > ends up in the middle of the molecule. And when I include multiple > sets of RDC data sets, why the ANI for each data set are overlapped > when the tensors differ (should they not be distinct?). Is there a > way to move ANI farther from the molecule? Or is it something in the > script? Or is it the version of xplor (I am using 2.33)? > The absolute positions of the pseudoatoms are not meaningful. Those with different resid do not interact with each other or with the RNA molecule. For visualization, you can scale and translate them manually as you see fit. best regards-- Charles _______________________________________________ Xplor-nih mailing list [email protected] https://dcb.cit.nih.gov/mailman/listinfo/xplor-nih
