hi, I have predicted a model of an RNA which is made up with two independent domains. I want to generated a conformational pool by Xplor-NIH, then I can pick out the representative ensemble by the EOM. This conformational sampling process may related bigger molecular translation and rotation which can make sure to sample all the possible solution conformations of the RNA; I do not know how to set the simulation parameters. Do someone have tried to do that?
Thanks Yikan Zhang
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