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Hello Rob--

> 
> I'm trying to do Cartesian space minimization and molecular dynamics on a
> pre-existing structure. However, my group wants to use 2 of our own energy
> functions: a distance constraint based energy function and another
> continuous function. Is there a way to write a 'module' or something that
> will interface with the dynamics verlet, or is included with the flags
> include <etc> statement? Is there some other way to do this?

This can be done by writing a new potential energy function. This can be
written in Fortran, C++, or Python. For the Fortran or C++ interfaces
you will need access to the full source code. Potential terms written in
Python should either be for development purposes, or computationally
quite inexpensive, as it's much slower than a compiled language. Please
contact me for further details.

best regards--
Charles
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