Charles at Schwieters.org wrote: >-----BEGIN PGP SIGNED MESSAGE----- >Hash: SHA1 > > >Hello Gary-- > > > >>I have had to write this into my submisasion script to get it to work >>with a very simle (make) parallel environment >> >>while read line; do >>machines="$machines $line" >>done < <(cat $PE_HOSTFILE | cut -d' ' -f1,1) >> >>/home/garyt/programs/xplor-nih/2.17.0/bin/xplor -parallel -machines >>"$machines" < $PWD/test_par.inp >> >> > >what is the format of the PE_HOSTFILE? It looks like you might be able >to just do: > >xplor -parallel -machines $PE_HOSTFILE $PWD/test_par.inp > >But perhaps a small tweak is necessary to bin/xplor, like the attached >diff. > >Please let me know how it goes. > >best regards-- >Charles > > >*************** >*** 391,397 **** > export PROGNAME > > if [ -f "$MACHINES" ]; then >! MACHINES=`grep -v ^# $MACHINES` > fi > > >- --- 391,397 ---- > export PROGNAME > > if [ -f "$MACHINES" ]; then >! MACHINES=`grep -v ^# $MACHINES | cut -d' ' -f1` > fi > > > >
Hi charles t hat would work but needs a bit more work as the file had info about threads etc but I can extemperize from here. Would you like me submit the pach back to you when i have finished? regards gary -- ------------------------------------------------------------------- Dr Gary Thompson Astbury Centre for Structural Molecular Biology, University of Leeds, Astbury Building, Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024 email: garyt at bmb.leeds.ac.uk Fax +44-113-2331407 -------------------------------------------------------------------
