Using the classic xplor interface, you can get the current radius of  
gyration with

coor rgyr sele (all) end

Hope this helps.

--JK


On Apr 13, 2008, at 1:05 PM, Nah Sivar wrote:

> How do I load a structure and calculate it's Radius of Gyration  
> using xplor-nih.
>
> Dr.Schweiters referred using protocol.initCollapse, but looking at  
> the documentation, i understand it to be more like for setting up  
> the Rgyr potential for a SA.
> How to use it for calculating the RGyr  ([(r-<r>)^2]^1/2 for a  
> given structure ?
>
> Thanks
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