I tested run the file "protG_mkpsf.inp" to create the extended structure of a protein; the output file is "template_protG.pdb." When I display the extended structure in Rasmol or in Pymol I got the amino acid sequence with the correct amino acids, but there are not peptide bonds. The peptide bonds are not formed. I used the default file "protG_mkpsf.inp" without any modifications. What statement should I change or what is wrong with this file "protG_mkpsf.inp"? I used "XPLOR-NIH 2.19 version", run in MAC OS.
Best regards, Thao yang (Thao Yang, Ph.D. Associate Professor, Biochemistry Chem. Dept., UWEC e-mail: yangt at uwec.edu<mailto:yangt at uwec.edu> phone: 715 836-4190) -------------- next part -------------- An HTML attachment was scrubbed... URL: http://dcb.cit.nih.gov/pipermail/xplor-nih/attachments/20080822/5e89a16a/attachment.html
