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Hello David-- > I'm trying to run Marvin an a 16-dual processor cluster and am getting > connect failures. > I'm using: > > xplor -parallel -machines ./machine_name_file -pport 22 -tcl sa_pass2.tcl > > sa_pass2.tcl.out > don't use port 22 for this- ssh uses this. Use a number larger than 1024 for this. > but still getting: > > connect attempt #28 to c1:22... > connection fault: (-2, 'Name or service not known') > > messages. I can ssh c1 -p 22 without problem, and namd2 distributes fine. > Is there something else I need to set for -pport (or -port, for that matter)? > The failure is not from ssh, but rather from Xplor-NIH itself. Perhaps dns isn't running on the compute nodes? > If I have a reasonable homology model, can I use it to start with? > How do I do this? > You might use this structure to help generate initial likelihoods. John can help more with this. best regards-- Charles -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.6 (GNU/Linux) Comment: Processed by Mailcrypt 3.5.8+ <http://mailcrypt.sourceforge.net/> iD8DBQFIKOLMPK2zrJwS/lYRAk8JAJ0QDDD3TlW99N4pulf93k1jr6g4bgCfbyut qYlvtlDb8Ro2Elc8DdG4VsY= =KyXc -----END PGP SIGNATURE-----
