I have added hydroxyproline parameters to the protein.par and protein.top files and have added 'HYP' to the residue types in psfGen.py When I use seq2psf I get the following errors:
%PATCH-ERR: angle -C +N +HN not found %PATCH-ERR: improper +HN +N -C -CA not found The program still creates the PSF file, but I was curious as to the patch-err. Thanks Fred Florida Atlantic University
