I've noticed two examples in the literature where folks have used step
potentials rather than "square well" potentials for some of ther restraints.
Is there an easy way to convert the NOE restraint from square to step?
I've been using an ad-hoc solution of setting the upper bound to 99
angstroms but this is only good for proteins with extended chains that do
not exceed this distance. It does not appear that I can use a value larger
than 99 angstroms because I get an error message in my out file if I try
that.
TIA,
David Lowry
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