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Hello Senthil--
> I am using XPLOR-NIH to calculate the structure of a peptide. I have
> to use cis peptide bond for the proline in the sequence. How will I
> define the peptide bond to be cis in
> XPLOR-NIH.
use psfGen.cisPeptide. An example of using this can be found in
eginput/PSF_generation/genCircPep.py
best regards--
Charles
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