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Hello Xiaogang--

> 
>      Is there an easy way to make a series of  stuctures generated by xplor
> into one ensemble pdb?
> 

Try the following script. Use  it like this:

./combineModels.py *.pdb  > combined.pdb

best regards--
Charles

#!/usr/bin/env python

from sys import argv, stdout

files = argv[1:]

model=1
for file in files:
    print "MODEL %8d" % model
    stdout.write(open(file).read())
    print "ENDMDL"
    model += 1
    pass
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