Author: eudoxos
Date: 2009-07-18 10:35:07 +0200 (Sat, 18 Jul 2009)
New Revision: 1876
Added:
trunk/doc/README
trunk/doc/yade-epydoc.conf
trunk/doc/yade-epydoc.py
Removed:
trunk/doc/Body.png
trunk/doc/CoulombCriterion.png
trunk/doc/DruckerPragerCriterion.png
trunk/doc/HookesLaw.png
trunk/doc/IdealElasticPlastic.png
trunk/doc/IdealRigidPlastic.png
trunk/doc/Interaction.png
trunk/doc/Motion.png
trunk/doc/NonIdealElasticPlastic1.png
trunk/doc/NonIdealElasticPlastic2.png
trunk/doc/README
trunk/doc/REMOVED_STUFF
trunk/doc/ViscoElastic.png
trunk/doc/ViscoPlastic.png
trunk/doc/schedule
trunk/doc/tree
trunk/doc/yadeClassDiagram.dia
trunk/doc/yadeSequenceDiagramExample.dia
Modified:
trunk/core/yade.cpp
trunk/gui/py/PythonUI.cpp
trunk/gui/py/pyAttrUtils.hpp
trunk/gui/qt3/QtGUI.cpp
Log:
1. Remove garbage from doc
2. Instruct getopt to not shuffle command-line arguments, so that their order
is preserved
3. Add epydoc documentation for all python classes and functions
Modified: trunk/core/yade.cpp
===================================================================
--- trunk/core/yade.cpp 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/core/yade.cpp 2009-07-18 08:35:07 UTC (rev 1876)
@@ -184,7 +184,7 @@
bool useGdb=true;
int ch; string gui=""; string simulationFileName=""; bool setup=false;
int verbose=0; bool coreOptions=true; bool explicitUI=false;
- while(coreOptions && (ch=getopt(argc,argv,"hnN:wC:cxvS:"))!=-1)
+ while(coreOptions && (ch=getopt(argc,argv,"+hnN:wC:cxvS:"))!=-1)
switch(ch){
case 'h': printHelp(); return 1;
case 'n': gui="NullGUI"; explicitUI=true; break;
@@ -196,7 +196,7 @@
case 'v': verbose+=1; break;
case 'S': simulationFileName=optarg; break;
case '-': coreOptions=false; break;
- default: printHelp(); return 1;
+ default: simulationFileName=optarg; coreOptions=false;
break; // printHelp(); return 1;
}
// save original options
Omega::instance().origArgv=argv; Omega::instance().origArgc=argc;
Deleted: trunk/doc/Body.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/CoulombCriterion.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/DruckerPragerCriterion.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/HookesLaw.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/IdealElasticPlastic.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/IdealRigidPlastic.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/Interaction.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/Motion.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/NonIdealElasticPlastic1.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/NonIdealElasticPlastic2.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/README
===================================================================
--- trunk/doc/README 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/doc/README 2009-07-18 08:35:07 UTC (rev 1876)
@@ -1,3 +0,0 @@
-you can download documentation from yade homepage on berlios.de
-
-and you can generate a reference with doxygen
\ No newline at end of file
Added: trunk/doc/README
===================================================================
--- trunk/doc/README 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/doc/README 2009-07-18 08:35:07 UTC (rev 1876)
@@ -0,0 +1,6 @@
+To generate documentation (dpxygen for c++ and epydoc for python classes), run
+
+ doxygen Doxyfile
+ yade-* yade-epydoc.py
+
+or more documentation, go to http://yade.wikia.com
Deleted: trunk/doc/REMOVED_STUFF
===================================================================
--- trunk/doc/REMOVED_STUFF 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/doc/REMOVED_STUFF 2009-07-18 08:35:07 UTC (rev 1876)
@@ -1,4 +0,0 @@
-This file records what elements were removed from yade's repositories and at
which point. The reason is that even if the component is in SVN history, it is
useless if someone doesn't know that is there.
-
- * PerlinNoise
-
Deleted: trunk/doc/ViscoElastic.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/ViscoPlastic.png
===================================================================
(Binary files differ)
Deleted: trunk/doc/schedule
===================================================================
--- trunk/doc/schedule 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/doc/schedule 2009-07-18 08:35:07 UTC (rev 1876)
@@ -1,67 +0,0 @@
-Milestone 1 (completed: September 2004)
Done
-
-Initial version of yade framework
Done
-SimpleSpring RigidBody, spherical element for testing (explicit calculations)
Done
-Plugin support (ClassFactory, class Factorable)
Done
-Easy extensibility for arbitrary element type (class Serialization)
Mostly Done
-XML Serialization
Done
-Interaction support between different physical models (Multimethods)
Done
-Add new physical element type, Cloth (mass spring system, explicit) for
testing multimethods and interactions
Done
-Implicit Cloth, to test framework extensibility
Postponed
-FEM beam element, explicit, to test framework extensibility
Done
-SDEC element, explicit, to test framework extensibility
Done
-Their interactions (collisions and glueing)
Mostly Donne
-Redesign Yade, based on previous tests
Done
-Complete doxygen documentation reference
Half Done
-
-Milestone 2 (Completed: June 2005)
Done
-
-Load FEM mesh from file (gmsh or netgen)
Done
-Start documentation - explain Yade priciples, ideas and design
Done
-Start documentation - explain how to use Yade as easy framework for physical
modelling
Done
-Start documentation - explain adding plugins
Done
-Start documentation - explain preprocessing, postprocessing and debugging
Done
-Yade runs without a GUI
Done
-Add automatic plugin detection
Done
-Start adding serious element types: SDEC with rotation conserved,
traingle-cylinder-sphere, SDEC cubical, Finite Element Method various elements,
Lattice Beam model Done (started)
-Start resolving their interactions
Done (started)
-
-Milestone 3
Ongoing
-
-Release beta version of yade framework
Done
-Release documentation (initial version)
Ongoing
-GUI to build time loop with actors
Ongoing
-Compare speed of DEM in yade with totally unextensible, focused on speed
spherical dem simulator (to see the cost of extensibility)
Ongoing
-Binary Serialization
Todo
-Rewrite Interaction Containers, so that they can store interaction between any
number of bodies (currently only two (bi-associative) are supported)
Todo
-Clean FEM in yade using new Interaction Containers
Todo
-Split DEM calculations into: HookesLaw, ElasticContactLaw, ElasticBondLaw
Mostly Done
-Resolve license problems of Magic Software math library
Ongoing
-Add two virtual functions to plugin interface: string longDescription() and
string shortDescription(), so that yade can print information about them from
within the GUI Todo
-
-Milestone 4
Todo
-
-Save/Load configurations in File Generator dialog box
Todo
-Add InteractionMatrix as another way to store interactions
Todo
-Gas Example, <a
href="http://www.compsoc.man.ac.uk/~lucky/Democritus/Theory/lenjon.html";>Lennard-Jones</a>
Forces Todo
-Add GridCollider to compare it with existing Sweep and Prune Collider
Todo
-Display graphical inheritance tree of all loaded plugins
Todo
-Perform benchmarks to compare speed of different revisions, and learn from
that what changes are making slower/faster code
Todo
-Perform (more) unit tests, to verify that working with code does not infer
with the calculation results
Todo
-Investigate again concept of 'parameters singleton', to see if it's still
suitable
Todo
-Use physical units, from dimnum or SIunits library
Todo
-Explore disturbed computing capabilities of yade (should make yade faster than
unextensible, focused on speed spherical dem simulator)
Todo
-
-Milestone 5
Todo
-
-GUI gives better control over the model, possibly add preprocessing
capabilities to GUI
Ongoing
-Possibly split yade into yade_server and yade_gui, or another way to prepare
yade for multiprocessor/disturbed calculations
Todo
-Easier preprocessing of data, import objects from blender, gmsh, netgen,
autocad, dxf
Todo
-yade_server communicates with yade_gui over the network
Todo
-yade_server uses multiple processors
Todo
-yade is doing calculations using disturbed computing
Todo
-
-Milestone 6
-
-not planned yet.
-
Deleted: trunk/doc/tree
===================================================================
--- trunk/doc/tree 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/doc/tree 2009-07-18 08:35:07 UTC (rev 1876)
@@ -1,456 +0,0 @@
-
-|-- plugins
-| |-- Body
-| | |-- BoundingVolume
-| | | |-- AABB
-| | | | |-- AABB.cpp
-| | | | `-- AABB.hpp
-| | | `-- BoundingSphere
-| | | |-- BoundingSphere.cpp
-| | | `-- BoundingSphere.hpp
-| | |-- BoundingVolumeFunctor
-| | | |-- Box2AABBFunctor
-| | | | |-- Box2AABBFunctor.cpp
-| | | | `-- Box2AABBFunctor.hpp
-| | | |-- InteractionDescriptionSet2AABBFunctor
-| | | | |-- InteractionDescriptionSet2AABBFunctor.cpp
-| | | | `-- InteractionDescriptionSet2AABBFunctor.hpp
-| | | |-- Sphere2AABBFunctor
-| | | | |-- Sphere2AABBFunctor.cpp
-| | | | `-- Sphere2AABBFunctor.hpp
-| | | `-- Terrain2AABBFunctor
-| | | |-- Terrain2AABBFunctor.cpp
-| | | `-- Terrain2AABBFunctor.hpp
-| | |-- GeometricalModel
-| | | |-- Box
-| | | | |-- Box.cpp
-| | | | `-- Box.hpp
-| | | |-- FEMSetGeometry
-| | | | |-- FEMSetGeometry.cpp
-| | | | `-- FEMSetGeometry.hpp
-| | | |-- LatticeSetGeometry
-| | | | |-- LatticeSetGeometry.cpp
-| | | | `-- LatticeSetGeometry.hpp
-| | | |-- LineSegment
-| | | | |-- LineSegment.cpp
-| | | | `-- LineSegment.hpp
-| | | |-- MarchingCubes
-| | | | |-- MarchingCubes.cpp
-| | | | `-- MarchingCubes.hpp
-| | | |-- Mesh2D
-| | | | |-- Mesh2D.cpp
-| | | | `-- Mesh2D.hpp
-| | | |-- Polyhedron
-| | | | |-- Polyhedron.cpp
-| | | | `-- Polyhedron.hpp
-| | | |-- Sphere
-| | | | |-- Sphere.cpp
-| | | | `-- Sphere.hpp
-| | | |-- Terrain
-| | | | |-- Terrain.cpp
-| | | | `-- Terrain.hpp
-| | | `-- Tetrahedron
-| | | |-- Tetrahedron.cpp
-| | | `-- Tetrahedron.hpp
-| | |-- GeometricalModelFunctor
-| | | |-- FEMSet2MarchingCubes
-| | | | |-- FEMSet2MarchingCubes.cpp
-| | | | `-- FEMSet2MarchingCubes.hpp
-| | | |-- FEMSet2Tetrahedrons
-| | | | |-- FEMSet2Tetrahedrons.cpp
-| | | | `-- FEMSet2Tetrahedrons.hpp
-| | | |-- LatticeSet2LatticeBeams
-| | | | |-- LatticeSet2LatticeBeams.cpp
-| | | | `-- LatticeSet2LatticeBeams.hpp
-| | | |-- LatticeSet2MarchingCubes
-| | | | |-- LatticeSet2MarchingCubes.cpp
-| | | | `-- LatticeSet2MarchingCubes.hpp
-| | | |-- ParticleSet2Mesh2D
-| | | | |-- ParticleSet2Mesh2D.cpp
-| | | | `-- ParticleSet2Mesh2D.hpp
-| | | `-- VRML2TerrainFunctor
-| | | |-- VRML2TerrainFunctor.cpp
-| | | `-- VRML2TerrainFunctor.hpp
-| | |-- InteractingGeometry
-| | | |-- InteractingBox
-| | | | |-- InteractingBox.cpp
-| | | | `-- InteractingBox.hpp
-| | | |-- InteractingSphere
-| | | | |-- InteractingSphere.cpp
-| | | | `-- InteractingSphere.hpp
-| | | `-- MetaInteractingGeometry
-| | | |-- MetaInteractingGeometry.cpp
-| | | `-- MetaInteractingGeometry.hpp
-| | |-- InteractingGeometryFunctor
-| | |-- PhysicalParameters
-| | | |-- BodyMacroParameters
-| | | | |-- BodyMacroParameters.cpp
-| | | | `-- BodyMacroParameters.hpp
-| | | |-- FEMNodeData
-| | | | |-- FEMNodeData.cpp
-| | | | `-- FEMNodeData.hpp
-| | | |-- FEMSetParameters
-| | | | |-- FEMSetParameters.cpp
-| | | | `-- FEMSetParameters.hpp
-| | | |-- FEMTetrahedronData
-| | | | |-- FEMTetrahedronData.cpp
-| | | | `-- FEMTetrahedronData.hpp
-| | | |-- LatticeBeamParameters
-| | | | |-- LatticeBeamParameters.cpp
-| | | | `-- LatticeBeamParameters.hpp
-| | | |-- LatticeNodeParameters
-| | | | |-- LatticeNodeParameters.cpp
-| | | | `-- LatticeNodeParameters.hpp
-| | | |-- LatticeSetParameters
-| | | | |-- LatticeSetParameters.cpp
-| | | | `-- LatticeSetParameters.hpp
-| | | |-- ParticleParameters
-| | | | |-- ParticleParameters.cpp
-| | | | `-- ParticleParameters.hpp
-| | | |-- ParticleSetParameters
-| | | | |-- ParticleSetParameters.cpp
-| | | | `-- ParticleSetParameters.hpp
-| | | `-- RigidBodyParameters
-| | | |-- RigidBodyParameters.cpp
-| | | `-- RigidBodyParameters.hpp
-| | `-- PhysicalParametersFunctor
-| | |-- FEMSetTextLoaderFunctor
-| | | |-- FEMSetTextLoaderFunctor.cpp
-| | | `-- FEMSetTextLoaderFunctor.hpp
-| | |-- FEMTetrahedronStiffness
-| | | |-- FEMTetrahedronStiffness.cpp
-| | | `-- FEMTetrahedronStiffness.hpp
-| | |-- LeapFrogOrientationIntegratorFunctor
-| | | |-- LeapFrogOrientationIntegratorFunctor.cpp
-| | | `-- LeapFrogOrientationIntegratorFunctor.hpp
-| | `-- LeapFrogPositionIntegratorFunctor
-| | |-- LeapFrogPositionIntegratorFunctor.cpp
-| | `-- LeapFrogPositionIntegratorFunctor.hpp
-| |-- DataRecorder
-| | |-- AveragePositionRecorder
-| | | |-- AveragePositionRecorder.cpp
-| | | `-- AveragePositionRecorder.hpp
-| | |-- ForceRecorder
-| | | |-- ForceRecorder.cpp
-| | | `-- ForceRecorder.hpp
-| | |-- PositionOrientationRecorder
-| | | |-- PositionOrientationRecorder.cpp
-| | | `-- PositionOrientationRecorder.hpp
-| | `-- VelocityRecorder
-| | |-- VelocityRecorder.cpp
-| | `-- VelocityRecorder.hpp
-| |-- Engine
-| | |-- ActionParameter
-| | | |-- ActionParameterForce
-| | | | |-- ActionParameterForce.cpp
-| | | | `-- ActionParameterForce.hpp
-| | | `-- ActionParameterMomentum
-| | | |-- ActionParameterMomentum.cpp
-| | | `-- ActionParameterMomentum.hpp
-| | |-- ActionParameterFunctor
-| | | |-- CundallNonViscousForceDampingFunctor
-| | | | |-- CundallNonViscousForceDampingFunctor.cpp
-| | | | `-- CundallNonViscousForceDampingFunctor.hpp
-| | | |-- CundallNonViscousMomentumDampingFunctor
-| | | | |-- CundallNonViscousMomentumDampingFunctor.cpp
-| | | | `-- CundallNonViscousMomentumDampingFunctor.hpp
-| | | |-- NewtonsForceLawFunctor
-| | | | |-- NewtonsForceLawFunctor.cpp
-| | | | `-- NewtonsForceLawFunctor.hpp
-| | | `-- NewtonsMomentumLawFunctor
-| | | |-- NewtonsMomentumLawFunctor.cpp
-| | | `-- NewtonsMomentumLawFunctor.hpp
-| | |-- ActionParameterInitializer
-| | | |-- ActionParameterInitializer.cpp
-| | | `-- ActionParameterInitializer.hpp
-| | |-- DeusExMachina
-| | | |-- ForceCondition ForceApplier
-| | | | |-- ForceCondition.cpp
-| | | | `-- ForceCondition.hpp
-| | | |-- GravityCondition GravityApplier
-| | | | |-- GravityCondition.cpp
-| | | | `-- GravityCondition.hpp
-| | | |-- RotationCondition Rotor
-| | | | |-- RotationCondition.cpp
-| | | | `-- RotationCondition.hpp
-| | | `-- TranslationCondition Translator
-| | | |-- TranslationCondition.cpp
-| | | `-- TranslationCondition.hpp
-| | | -- ActionParameterReset ter
-| | | |-- ActionParameterReset.cpp
-| | | `-- ActionParameterReset.hpp
-| | `-- InteractionSolver
-| | |-- ElasticContactLaw
-| | | |-- ElasticContactLaw.cpp
-| | | `-- ElasticContactLaw.hpp
-| | |-- ErrorTolerantLaw
-| | | |-- ErrorTolerantLaw.cpp
-| | | `-- ErrorTolerantLaw.hpp
-| | |-- FEMLaw
-| | | |-- FEMLaw.cpp
-| | | `-- FEMLaw.hpp
-| | |-- MassSpringBody2RigidBodyLaw
-| | | |-- MassSpringBody2RigidBodyLaw.cpp
-| | | `-- MassSpringBody2RigidBodyLaw.hpp
-| | |-- MassSpringLaw
-| | | |-- MassSpringLaw.cpp
-| | | `-- MassSpringLaw.hpp
-| | |-- SDECTimeStepper
-| | | |-- SDECTimeStepper.cpp
-| | | `-- SDECTimeStepper.hpp
-| | `-- SimpleSpringLaw
-| | |-- SimpleSpringLaw.cpp
-| | `-- SimpleSpringLaw.hpp
-| `-- Interaction
-| |-- BroadInteractor
-| | |-- PersistentSAPCollider
-| | | |-- PersistentSAPCollider.cpp
-| | | `-- PersistentSAPCollider.hpp
-| | |-- SAPCollider
-| | | |-- SAPCollider.cpp
-| | | `-- SAPCollider.hpp
-| | `-- SimpleBroadInteractor
BroadInteractionMetaEngine
-| | |-- SimpleBroadInteractor.cpp
-| | `-- SimpleBroadInteractor.hpp
-| |-- InteractionGeometry
-| | |-- ClosestFeatures
-| | | |-- ClosestFeatures.cpp
-| | | `-- ClosestFeatures.hpp
-| | |-- ErrorTolerantContactModel
-| | | |-- ErrorTolerantContactModel.cpp
-| | | `-- ErrorTolerantContactModel.hpp
-| | |-- MacroMicroContactGeometry
-| | | |-- MacroMicroContactGeometry.cpp
-| | | `-- MacroMicroContactGeometry.hpp
-| | |-- SDECLinkGeometry
-| | | |-- SDECLinkGeometry.cpp
-| | | `-- SDECLinkGeometry.hpp
-| | `-- SpringGeometry
-| | |-- SpringGeometry.cpp
-| | `-- SpringGeometry.hpp
-| |-- InteractionGeometryFunctor
-| | |-- ClosestFeatures
-| | | |-- AABox2Sphere4ClosestFeatures
-| | | | |-- AABox2Sphere4ClosestFeatures.cpp
-| | | | `-- AABox2Sphere4ClosestFeatures.hpp
-| | | |-- Box2Box4ClosestFeatures
-| | | | |-- Box2Box4ClosestFeatures.cpp
-| | | | `-- Box2Box4ClosestFeatures.hpp
-| | | |-- Box2Sphere4ClosestFeatures
-| | | | |-- Box2Sphere4ClosestFeatures.cpp
-| | | | `-- Box2Sphere4ClosestFeatures.hpp
-| | | |-- Sphere2Mesh2D4ClosestFeatures
-| | | | |-- Sphere2Mesh2D4ClosestFeatures.cpp
-| | | | `-- Sphere2Mesh2D4ClosestFeatures.hpp
-| | | |-- Sphere2Sphere4ClosestFeatures
-| | | | |-- Sphere2Sphere4ClosestFeatures.cpp
-| | | | `-- Sphere2Sphere4ClosestFeatures.hpp
-| | | `-- Terrain2Sphere4ClosestFeatures
-| | | |-- Terrain2Sphere4ClosestFeatures.cpp
-| | | `-- Terrain2Sphere4ClosestFeatures.hpp
-| | |-- ErrorTolerant
-| | | |-- Box2Sphere4ErrorTolerant
-| | | | |-- Box2Sphere4ErrorTolerant.cpp
-| | | | `-- Box2Sphere4ErrorTolerant.hpp
-| | | `-- Sphere2Sphere4ErrorTolerant
-| | | |-- Sphere2Sphere4ErrorTolerant.cpp
-| | | `-- Sphere2Sphere4ErrorTolerant.hpp
-| | `-- MacroMicroContactGeometry
-| | |-- Box2Sphere4MacroMicroContactGeometry
-| | | |-- Box2Sphere4MacroMicroContactGeometry.cpp
-| | | `-- Box2Sphere4MacroMicroContactGeometry.hpp
-| | `-- Sphere2Sphere4MacroMicroContactGeometry
-| | |-- Sphere2Sphere4MacroMicroContactGeometry.cpp
-| | `-- Sphere2Sphere4MacroMicroContactGeometry.hpp
-| |-- InteractionPhysics
-| | |-- ElasticContactParameters
-| | | |-- ElasticContactParameters.cpp
-| | | `-- ElasticContactParameters.hpp
-| | |-- SDECLinkPhysics
-| | | |-- SDECLinkPhysics.cpp
-| | | `-- SDECLinkPhysics.hpp
-| | `-- SpringPhysics
-| | |-- SpringPhysics.cpp
-| | `-- SpringPhysics.hpp
-| `-- InteractionPhysicsFunctor
-| `-- ElasticContactParameters
-| `-- MacroMicroElasticRelationships
-| |-- MacroMicroElasticRelationships.cpp
-| `-- MacroMicroElasticRelationships.hpp
-`-- yade
- |-- Body
- | |-- Body
- | | |-- Body.cpp
- | | |-- Body.hpp
- | | |-- BodyContainer.cpp
- | | |-- BodyContainer.hpp
- | | |-- MetaBody.cpp
- | | `-- MetaBody.hpp
- | |-- BoundingVolume
- | | |-- BoundingVolume.cpp
- | | |-- BoundingVolume.hpp
- | | |-- BoundingVolumeFunctor.hpp
BoundingVolumeEngine.hpp
- | | |-- BoundingVolumeMetaEngine.cpp
- | | `-- BoundingVolumeMetaEngine.hpp
- | |-- GeometricalModel
- | | |-- GeometricalModel.cpp
- | | |-- GeometricalModel.hpp
- | | |-- GeometricalModelDispatcher.cpp metaengine
- | | |-- GeometricalModelDispatcher.hpp
- | | `-- GeometricalModelFunctor.hpp engine
- | |-- InteractingGeometry
- | | |-- InteractingGeometry.cpp
- | | |-- InteractingGeometry.hpp
- | | |-- InteractingGeometryDispatcher.cpp
==========MetaEngine
- | | |-- InteractingGeometryDispatcher.hpp
- | | `-- InteractingGeometryFunctor.hpp
==========Engine
- | `-- PhysicalParameters split into
State and PhysicalParameters (and Body will contain 5 classes)
- | |-- PhysicalParameters.cpp
- | |-- PhysicalParameters.hpp
- | |-- PhysicalParametersDispatcher.cpp
===========MetaEngine
- | |-- PhysicalParametersDispatcher.hpp
- | `-- PhysicalParametersFunctor.hpp
===========Engine
- | `-- State split into State and
PhysicalParameters (and Body will contain 5 classes)
- | |-- State.cpp
- | |-- State.hpp
- | |-- StateMetaEngine.cpp
===========MetaEngine
- | |-- StateMetaEngine.hpp
- | `-- StateEngine.hpp
===========Engine
-
- |-- Engine
- | |-- ActionParameter.hpp
PhysicalAction
- | |-- ActionParameterContainer.cpp
- | |-- ActionParameterContainer.hpp
- | |-- ActionParameterDispatcher.cpp
PhysicalActionMetaEngine
- | |-- ActionParameterDispatcher.hpp
- | |-- ActionParameterFunctor.hpp
PhysicalActionEngine
-
-
PhysicalActionModifierEngine
-
PhysicalActionUpdatorEngine
-
PhysicalActionCreatorEngine
-
PhysicalActionDeleterEngine
-
-
-?????????????????????????????????????????????????????????????????????? BEGIN
-
GeometricalModelModifier
-
Geomet==========ModifierMetaEngine
-
Geomet==========ModifierEngine
-
-
PhysicalParamatersModifier
-
P=======ParamatersModifierMetaEngine
-
P=======ParamatersModifierEngine
-?????????????????????????????????????????????????????????????????????? END
-
-
-
-??????????????????????????????????????????????????????????????????????????????????????
BEGIN
-
InetarctionGeometryModifier
-
InetarctionGeometryModifierMetaEngine
-
InetarctionGeometryModifierEngine
-
-
InetarctionPhysicsModifier
-
InetarctionPhysicsModifierMetaEngine
-
InetarctionPhysicsModifierEngine
-???????????????????????????????????????????????????????????????????????????????????????
END
-
-
-
-
- | |-- DeusExMachina.cpp
- | |-- DeusExMachina.hpp
- | |-- InteractionSolver.cpp
- | `-- InteractionSolver.hpp
- |-- Interaction
- | |-- Interaction
- | | |-- BroadInteractor.cpp
BroadInteractionEngine
- | | |-- BroadInteractor.hpp
- | | |-- Interaction.cpp
- | | |-- Interaction.hpp
- | | |-- InteractionContainer.cpp
- | | `-- InteractionContainer.hpp
- | |-- InteractionGeometry
- | | |-- InteractionGeometry.hpp
NarrowInteractionGeometry
- | | |-- InteractionGeometryDispatcher.cpp
Narro====================MetaEngine
- | | |-- InteractionGeometryDispatcher.hpp
- | | `-- InteractionGeometryFunctor.hpp
Narro====================Engine
- | `-- InteractionPhysics
- | |-- InteractionPhysics.hpp
- | |-- InteractionPhysicsDispatcher.cpp
InteractionPhysicsMetaEngine
- | |-- InteractionPhysicsDispatcher.hpp
- | `-- InteractionPhysicsFunctor.hpp
In================Engine
- `-- yade
- |-- Engine.hpp
- |-- FileGenerator.cpp
- |-- FileGenerator.hpp
- |-- FrontEnd.cpp
- |-- FrontEnd.hpp
- |-- Omega.cpp
- |-- Omega.hpp
- |-- RenderingEngine.hpp
- |-- SimulationLoop.cpp
- |-- SimulationLoop.hpp
- |-- yade.cpp
- |-- yadeExceptions.cpp
- `-- yadeExceptions.hpp
-
-185 directories, 424 files
-
-
-
-
-
-
-
-
-IDEA
-
-
- |-- Interaction
- | |-- Interaction
- | | |-- BroadInteractor.cpp
BroadInteractionEngine
- | | |-- BroadInteractor.hpp
- | | |-- Interaction.cpp
- | | |-- Interaction.hpp
- | | |-- InteractionContainer.cpp
- | | `-- InteractionContainer.hpp
-
- PotentialInteraction
-
- RealInteraction
-
-
- | |-- InteractionGeometry
- | | |-- InteractionGeometry.hpp
NarrowInteractionGeometry
- | | |-- InteractionGeometryDispatcher.cpp
Narro====================MetaEngine
- | | |-- InteractionGeometryDispatcher.hpp
- | | `-- InteractionGeometryFunctor.hpp
Narro====================Engine
- | `-- InteractionPhysics
- | |-- InteractionPhysics.hpp
- | |-- InteractionPhysicsDispatcher.cpp
InteractionPhysicsMetaEngine
- | |-- InteractionPhysicsDispatcher.hpp
- | `-- InteractionPhysicsFunctor.hpp
In================Engine
-
-
-
-broad interactor will fill a container with ids.
-
-
-
-Broad Narrow Physics
-
-ids geometry+isNew physics
-
-
-
-
-
-
-
-BoundingVolume InteractingGeometry
GeometricalModel State PhysicalParameters
-
-
-NarrowInteractionGeometry InteractionPhysics
-
-
-PhysicalAction
-
Added: trunk/doc/yade-epydoc.conf
===================================================================
--- trunk/doc/yade-epydoc.conf 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/doc/yade-epydoc.conf 2009-07-18 08:35:07 UTC (rev 1876)
@@ -0,0 +1,154 @@
+#
+# copied from
http://epydoc.sourceforge.net/manual-reference.html#sample-configuration-file
+# and adapted
+#
+
+[epydoc] # Epydoc section marker (required by ConfigParser)
+
+# The list of objects to document. Objects can be named using
+# dotted names, module filenames, or package directory names.
+# Alases for this option include "objects" and "values".
+modules: yade
+
+# The type of output that should be generated. Should be one
+# of: html, text, latex, dvi, ps, pdf.
+output: html
+
+# The path to the output directory. May be relative or absolute.
+target: epydoc/
+
+# An integer indicating how verbose epydoc should be. The default
+# value is 0; negative values will supress warnings and errors;
+# positive values will give more verbose output.
+verbosity: 0
+
+# A boolean value indicating that Epydoc should show a tracaback
+# in case of unexpected error. By default don't show tracebacks
+debug: 0
+
+# If True, don't try to use colors or cursor control when doing
+# textual output. The default False assumes a rich text prompt
+simple-term: 0
+
+
+### Generation options
+
+# The default markup language for docstrings, for modules that do
+# not define __docformat__. Defaults to epytext.
+docformat: epytext
+
+# Whether or not parsing should be used to examine objects.
+parse: yes
+
+# Whether or not introspection should be used to examine objects.
+introspect: yes
+
+# Don't examine in any way the modules whose dotted name match this
+# regular expression pattern.
+exclude: yade.(_customConverters|otherModuleToExclude)
+
+# Don't perform introspection on the modules whose dotted name match this
+# regular expression pattern.
+#exclude-introspect
+
+# Don't perform parsing on the modules whose dotted name match this
+# regular expression pattern.
+#exclude-parse
+
+# The format for showing inheritance objects.
+# It should be one of: 'grouped', 'listed', 'included'.
+inheritance: listed
+
+# Whether or not to inclue private variables. (Even if included,
+# private variables will be hidden by default.)
+private: yes
+
+# Whether or not to list each module's imports.
+imports: yes
+
+# Whether or not to include syntax highlighted source code in
+# the output (HTML only).
+sourcecode: yes
+
+# Whether or not to includea a page with Epydoc log, containing
+# effective option at the time of generation and the reported logs.
+include-log: yes
+
+
+### Output options
+
+# The documented project's name.
+name: Yade
+
+# The CSS stylesheet for HTML output. Can be the name of a builtin
+# stylesheet, or the name of a file.
+css: white
+
+# The documented project's URL.
+url: http://yade.wikia.com
+
+# HTML code for the project link in the navigation bar. If left
+# unspecified, the project link will be generated based on the
+# project's name and URL.
+#link: <a href="somewhere">My Cool Project</a>
+
+# The "top" page for the documentation. Can be a URL, the name
+# of a module or class, or one of the special names "trees.html",
+# "indices.html", or "help.html"
+#top: os.path
+
+# An alternative help file. The named file should contain the
+# body of an HTML file; navigation bars will be added to it.
+#help: my_helpfile.html
+
+# Whether or not to include a frames-based table of contents.
+frames: yes
+
+# Whether each class should be listed in its own section when
+# generating LaTeX or PDF output.
+separate-classes: no
+
+
+### API linking options
+
+# Define a new API document. A new interpreted text role
+# will be created
+#external-api: epydoc
+
+# Use the records in this file to resolve objects in the API named NAME.
+#external-api-file: epydoc:api-objects.txt
+
+# Use this URL prefix to configure the string returned for external API.
+#external-api-root: epydoc:http://epydoc.sourceforge.net/api
+
+
+### Graph options
+
+# The list of graph types that should be automatically included
+# in the output. Graphs are generated using the Graphviz "dot"
+# executable. Graph types include: "classtree", "callgraph",
+# "umlclass". Use "all" to include all graph types
+graph: all
+
+# The path to the Graphviz "dot" executable, used to generate
+# graphs.
+dotpath: /usr/bin/dot
+
+# The name of one or more pstat files (generated by the profile
+# or hotshot module). These are used to generate call graphs.
+pstat: profile.out
+
+# Specify the font used to generate Graphviz graphs.
+# (e.g., helvetica or times).
+graph-font: Helvetica
+
+# Specify the font size used to generate Graphviz graphs.
+graph-font-size: 10
+
+
+### Return value options
+
+# The condition upon which Epydoc should exit with a non-zero
+# exit status. Possible values are error, warning, docstring_warning
+#fail-on: error
+
Added: trunk/doc/yade-epydoc.py
===================================================================
--- trunk/doc/yade-epydoc.py 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/doc/yade-epydoc.py 2009-07-18 08:35:07 UTC (rev 1876)
@@ -0,0 +1,13 @@
+#
+# Run this file with yade to generate documentation for python modules &
classes within yade:
+#
+# yade-trunk yade-epydoc.py
+#
+#
+
+import sys
+# add the configuration file
+sys.argv+=['--config=yade-epydoc.conf'] # '-v'
+from epydoc.cli import cli
+cli()
+quit()
Deleted: trunk/doc/yadeClassDiagram.dia
===================================================================
(Binary files differ)
Deleted: trunk/doc/yadeSequenceDiagramExample.dia
===================================================================
(Binary files differ)
Modified: trunk/gui/py/PythonUI.cpp
===================================================================
--- trunk/gui/py/PythonUI.cpp 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/gui/py/PythonUI.cpp 2009-07-18 08:35:07 UTC (rev 1876)
@@ -102,7 +102,7 @@
int PythonUI::run(int argc, char *argv[]) {
int ch;
- while((ch=getopt(argc,argv,"hns:x"))!=-1){
+ while((ch=getopt(argc,argv,"+hns:x"))!=-1){
switch(ch){
case 'h': help(); return 1; break;
case 's': runScript=string(optarg); break;
Modified: trunk/gui/py/pyAttrUtils.hpp
===================================================================
--- trunk/gui/py/pyAttrUtils.hpp 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/gui/py/pyAttrUtils.hpp 2009-07-18 08:35:07 UTC (rev 1876)
@@ -38,6 +38,7 @@
class pyClass{ \
private: void init(string clss){
proxee=dynamic_pointer_cast<yadeClass>(ClassFactory::instance().createShared(clss.empty()?
#yadeClass : clss)); if(!proxee) throw runtime_error("Invalid class
`"+clss+"': either nonexistent, or unable to cast to `"+#yadeClass+"'"); } \
public: shared_ptr<yadeClass> proxee; \
+ typedef yadeClass wrappedClass; \
/* void ensureProxee(){ if(!proxee) throw
runtime_error(string("No proxied `")+#yadeClass+"' (programming error, please
report!)"); } */ \
pyClass(string clss="", python::dict attrs=python::dict()){
init(clss); python::list l=attrs.items(); int len=PySequence_Size(l.ptr());
for(int i=0; i<len; i++){ python::extract<python::tuple> t(l[i]);
python::extract<string> keyEx(t()[0]); if(!keyEx.check()) throw
invalid_argument("Attribute keys must be strings.");
wrappedPySetAttr2(keyEx(),t()[1]); } } \
pyClass(const shared_ptr<yadeClass>& _proxee): proxee(_proxee)
{} \
@@ -60,7 +61,7 @@
void pyName##_set(pyClass proxy){ proxee->yadeName=proxy.proxee; }
/*! Boost.python's definition of python object corresponding to BASIC_PY_PROXY
*/
#define BASIC_PY_PROXY_WRAPPER(pyClass,pyName) \
-
boost::python::class_<pyClass>(pyName,python::init<python::optional<string,python::dict>
>()) \
+ boost::python::class_<pyClass /*, shared_ptr<pyClass::wrappedClass> ---
see http://wiki.python.org/moin/boost.python/PointersAndSmartPointers */
>(pyName,python::init<python::optional<string,python::dict> >()) \
.ATTR_ACCESS_PY(pyClass) \
.def("__str__",&pyClass::pyStr).def("__repr__",&pyClass::pyStr) \
.add_property("name",&pyClass::className) \
Modified: trunk/gui/qt3/QtGUI.cpp
===================================================================
--- trunk/gui/qt3/QtGUI.cpp 2009-07-17 21:50:55 UTC (rev 1875)
+++ trunk/gui/qt3/QtGUI.cpp 2009-07-18 08:35:07 UTC (rev 1876)
@@ -42,7 +42,7 @@
int QtGUI::run(int argc, char *argv[])
{
int ch;
- while( ( ch = getopt(argc,argv,"hw") ) != -1)
+ while( ( ch = getopt(argc,argv,"+hw") ) != -1)
switch(ch){
case 'w' : mainWindowHidden=true; break;
case 'h' : help(); return 0; break;
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