New question #152385 on Yade: https://answers.launchpad.net/yade/+question/152385
Dear All, I can run my code well in 0.5 version. But if I decrease the strain rate applying the triaxial load, the "segmentation fault" will be appeared and stop the modeling. I see the new version that is 0.6.2, have already solved the problem looks like that the same message stop the modeling. I think maybe my problem can also be solved through changed the version of Yade. Then I installed the new version 0.60.2 instead of the old version 0.50. And I modified my python code following the error reminder. But the "segmentation fault" also appear even through I run the code that can run well in the old version. The process is listed as follow: jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `yeascu' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py Traceback (most recent call last): File "/home/jiaoliqing/YADE/bin/yade-cleanComp060", line 152, in runScript execfile(script,globals()) File "16-09-re-3d.py", line 48, in <module> spheres=regularHexa_J(pack.inAlignedBox((-.25*specimenLength,-.05*specimenLength,-.25*specimenLength),(.25*specimenLength,.05*specimenLength,0.25*specimenLength)),radius=sphereRadius,gap=0.0,material=concreteId) NameError: name 'specimenLength' is not defined [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `esacks' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py Traceback (most recent call last): File "/home/jiaoliqing/YADE/bin/yade-cleanComp060", line 152, in runScript execfile(script,globals()) File "16-09-re-3d.py", line 50, in <module> spheres=regularHexa_J(pack.inAlignedBox((-.25*specimenLength,-.05*specimenLength,-.25*specimenLength),(.25*specimenLength,.05*specimenLength,0.25*specimenLength)),radius=sphereRadius,gap=0.0,material=concreteId) TypeError: can't multiply sequence by non-int of type 'float' [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `ucssye' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py Traceback (most recent call last): File "/home/jiaoliqing/YADE/bin/yade-cleanComp060", line 152, in runScript execfile(script,globals()) File "16-09-re-3d.py", line 50, in <module> spheres=regularHexa_J(pack.inAlignedBox((-.25*0.1,-.05*0.1,-.25*0.1),(.25*0.1,.05*0.1,0.25*0.1)),radius=sphereRadius,gap=0.0,material=concreteId) File "16-09-re-3d.py", line 33, in regularHexa_J a=2*radius+gap TypeError: can only concatenate tuple (not "float") to tuple [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `kcaesy' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py Traceback (most recent call last): File "/home/jiaoliqing/YADE/bin/yade-cleanComp060", line 152, in runScript execfile(script,globals()) File "16-09-re-3d.py", line 113, in <module> [Ip2_2xCohFrictMat_CohFrictPhys(setCohesionNow=False,setCohesionOnNewContacts=True,normalCohesion=40e3,shearCohesion=40e3)], AttributeError: No such attribute: shearCohesion. [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `aduksy' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py Traceback (most recent call last): File "/home/jiaoliqing/YADE/bin/yade-cleanComp060", line 152, in runScript execfile(script,globals()) File "16-09-re-3d.py", line 113, in <module> [Ip2_2xCohFrictMat_CohFrictPhys(setCohesionNow=False,setCohesionOnNewContacts=True,normalAdhesion=40e3,shearAdhesion=40e3)], AttributeError: No such attribute: normalAdhesion. [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `kecyas' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py /home/jiaoliqing/YADE/lib/yade-cleanComp060/py/yade/__init__.py:114: DeprecationWarning: Class `Law2_ScGeom_CohFrictPhys_ElasticPlastic' was renamed to (or replaced by) `Law2_ScGeom_CohFrictPhys_CohesionMoment', update your code! (you can run 'yade --update script.py' to do that automatically) /home/jiaoliqing/YADE/lib/yade-cleanComp060/py/yade/__init__.py:114: DeprecationWarning: Class `InteractionDispatchers' was renamed to (or replaced by) `InteractionLoop', update your code! (you can run 'yade --update script.py' to do that automatically) Traceback (most recent call last): File "/home/jiaoliqing/YADE/bin/yade-cleanComp060", line 152, in runScript execfile(script,globals()) File "16-09-re-3d.py", line 119, in <module> SnapshotEngine(iterPeriod=200,fileBase='/tmp/12_08_c-',viewNo=0), NameError: name 'SnapshotEngine' is not defined [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `csuaky' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py /home/jiaoliqing/YADE/lib/yade-cleanComp060/py/yade/__init__.py:114: DeprecationWarning: Class `Law2_ScGeom_CohFrictPhys_ElasticPlastic' was renamed to (or replaced by) `Law2_ScGeom_CohFrictPhys_CohesionMoment', update your code! (you can run 'yade --update script.py' to do that automatically) /home/jiaoliqing/YADE/lib/yade-cleanComp060/py/yade/__init__.py:114: DeprecationWarning: Class `InteractionDispatchers' was renamed to (or replaced by) `InteractionLoop', update your code! (you can run 'yade --update script.py' to do that automatically) [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `caseuy' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py Traceback (most recent call last): File "/home/jiaoliqing/YADE/bin/yade-cleanComp060", line 152, in runScript execfile(script,globals()) File "16-09-re-3d.py", line 114, in <module> [LLaw2_ScGeom_CohFrictPhys_CohesionMoment()] NameError: name 'LLaw2_ScGeom_CohFrictPhys_CohesionMoment' is not defined [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `ykecsu' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py /home/jiaoliqing/YADE/lib/yade-cleanComp060/py/yade/__init__.py:114: DeprecationWarning: Class `InteractionDispatchers' was renamed to (or replaced by) `InteractionLoop', update your code! (you can run 'yade --update script.py' to do that automatically) [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: --------------------------------------------------------------------------- KeyboardInterrupt Traceback (most recent call last) /home/jiaoliqing/YADE/lib/yade-cleanComp060/py/yade/__init__.pyc in refreshEvent(self) 187 def yzxSlot(self): self.setViewAxes((-1,0,0),(0,0,1)) 188 def zxySlot(self): self.setViewAxes((0,-1,0),(1,0,0)) --> 189 def refreshEvent(self): 190 self.refreshValues() 191 self.activateControls() KeyboardInterrupt: Do you really want to exit ([y]/n)? Yade: normal exit. Terminated jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `ceuykd' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: 10567 WARN yade.Engine /home/jiaoliqing/yade-0.60.2/pkg/common/Collider.cpp:41 findBoundDispatcherInEnginesIfNoFunctorsAndWarn: Collider.boundDispatcher had no functors defined, while there was a BoundDispatcher found in O.engines. Since version 0.60 (r2396), Collider has boundDispatcher integrated in itself; separate BoundDispatcher should not be used anymore. For now, I will fix it for you, but change your script! Where it reads e.g. O.engines=[..., BoundDispatcher([Bo1_Sphere_Aabb(),Bo1_Facet_Aabb()]), InsertionSortCollider(), ... ] it should become O.engines=[..., InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Facet_Aabb()]), ... ] instead. python: malloc.c:4628: _int_malloc: Assertion `(unsigned long)(size) >= (unsigned long)(nb)' failed. Segmentation fault jiaoliqing@ubuntu:~/YADE/bin$ yade-cleanComp060 16-09-re-3d.py Welcome to Yade 0.60 TCP python prompt on localhost:9000, auth cookie `daeusy' XMLRPC info provider on http://localhost:21000 Running script 16-09-re-3d.py [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view, F10 both, F9 generator, F8 plot. ]] Yade [1]: Segmentation fault May I have your help? Could you explain that why the segmentation fault will appear when I dwindle the loading rate? And how to solve this problem? Thank you! Looking forward to your replay! Best Regards Liqing -- You received this question notification because you are a member of yade-users, which is an answer contact for Yade. _______________________________________________ Mailing list: https://launchpad.net/~yade-users Post to : [email protected] Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
