Question #402934 on Yade changed:
https://answers.launchpad.net/yade/+question/402934
Status: Open => Solved
Gary Pekmezi confirmed that the question is solved:
This problem is resolved. The random sample function np.random.choice()
needs the parameter replace=False, otherwise it samples some spheres
more than once. Having duplicate spheres in my scene is what was causing
the issue.
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