New question #403764 on Yade: https://answers.launchpad.net/yade/+question/403764
Hi all, I've been able to get my YADE script working on my university's HPC via PBS, and have managed to get it to save output files. However, the script only runs for a second or so before an auto-exit dialog appears in YADE and seems to stop the script. This is probably a simple question but how can I prevent YADE from doing this and make sure it completes the whole script? Below is the PBS script I am using. #!/bin/bash #OPTIONS FOR PBS PRO ============================================================== #PBS -P HPCA-02414-PGR #PBS -l walltime=2:00:00 #PBS -l select=1:ncpus=2:mem=4gb #PBS -k oe #PBS -o gds-test export PBS_O_PATH="$PBS_O_PATH:$HOME/YADE" #OPTIONS FOR PBS PRO ================================================================ echo ------------------------------------------------------ echo -n 'Job is running on node '; cat $PBS_NODEFILE echo ------------------------------------------------------ echo PBS: qsub is running on $PBS_O_HOST echo PBS: originating queue is $PBS_O_QUEUE echo PBS: executing queue is $PBS_QUEUE echo PBS: working directory is $PBS_O_WORKDIR echo PBS: execution mode is $PBS_ENVIRONMENT echo PBS: job identifier is $PBS_JOBID echo PBS: job name is $PBS_JOBNAME echo PBS: node file is $PBS_NODEFILE echo PBS: current home directory is $PBS_O_HOME echo PBS: PATH = $PBS_O_PATH echo ------------------------------------------------------ cd $PBS_O_WORKDIR/YADE yade -n --threads=2 gds.py exit 0 Please let me know if you need me to provide any more information; as far as I can tell the YADE implementation and script are fine, as the code works properly outside of PBS. Matt. -- You received this question notification because your team yade-users is an answer contact for Yade. _______________________________________________ Mailing list: https://launchpad.net/~yade-users Post to : [email protected] Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
