Question #452277 on Yade changed:
https://answers.launchpad.net/yade/+question/452277

    Status: Answered => Solved

Antoine Wautier confirmed that the question is solved:
Hi Bruno,

Thanks for these precisions. Initializing a new FlowEngine is the solution. 
However, this will lead to a larger computation time ... 
By doing so it works, I just have the following warning from time to time:
"negative volume for an ordinary pore (temp warning, should still be safe)"
Could you tell me from where this comes from? Is it critical?

Thanks again
Best
Antoine

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