Question #644156 on Yade changed:
https://answers.launchpad.net/yade/+question/644156
Description changed to:
hi all,
I need to save the deformation of the sample in UCS test, for post processing,
in below script - maybe by using defToVtk can you please let me know how? I
could not find any example in this regards,
Thanks
#!/usr/bin/python
# -*- coding: utf-8 -*-
from __future__ import division
from yade import plot,pack,timing, qt
import time, sys, os, copy
#import matplotlib
#matplotlib.rc('text',usetex=True)
#matplotlib.rc('text.latex',preamble=r'\usepackage{concrete}\usepackage{euler}')
"""
A fairly complex script performing uniaxial tension-compression test on
hyperboloid-shaped specimen.
Most parameters of the model (and of the setup) can be read from table using
yade-multi.
After the simulation setup, tension loading is run and stresses are
periodically saved for plotting
as well as checked for getting below the maximum value so far. This indicates
failure (see stopIfDamaged
function). After failure in tension, the original setup is loaded anew and the
sense of loading reversed.
After failure in compression, strain-stress curves are saved via
plot.saveGnuplot and we exit,
giving some useful information like peak stresses in tension/compression.
Running this script for the first time can take long time, as the specimen is
prepared using triaxial
compression. Next time, however, an attempt is made to load
previously-generated packing
(from /tmp/triaxPackCache.sqlite) and this expensive procedure is avoided.
The specimen length can be specified, its diameter is half of the length and
skirt of the hyperboloid is
4/5 of the width.
The particle size is constant and can be specified using the sphereRadius
parameter.
The 3d display has displacement scaling applied, so that the fracture looks
more spectacular. The scale
is 1000 for tension and 100 for compression.
"""
# default parameters or from table
readParamsFromTable(noTableOk=True, # unknownOk=True,
young=270e6,
poisson=.2,
sigmaT=30e4,
frictionAngle=atan(.75),
epsCrackOnset=1e-3,
relDuctility=20,
intRadius=1.5,
dtSafety=.8,
damping=0.4,
strainRateTension=1e-1,
strainRateCompression=1e-1,
setSpeeds=True,
# 1=tension, 2=compression (ANDed; 3=both)
doModes=2,
specimenLength=.030,
sphereRadius=5e-3,
# isotropic confinement (should be negative)
isoPrestress=0,
)
from yade.params.table import *
if 'sigmaT=3.5e6, compression' in O.tags.keys():
O.tags['id']=O.tags['id']+O.tags['sigmaT=3.5e6, compression']
# make geom; the dimensions are hard-coded here; could be in param table if
desired
# z-oriented hyperboloid, length 20cm, diameter 10cm, skirt 8cm
# using spheres 7mm of diameter
concreteId=O.materials.append(CpmMat(young=young,frictionAngle=frictionAngle,poisson=poisson,density=4800,sigmaT=sigmaT,relDuctility=relDuctility,epsCrackOnset=epsCrackOnset,isoPrestress=isoPrestress))
#concreteId=O.materials.append(CohFrictMat(young=30e9,poisson=0.2,alphaKr=3000,alphaKtw=3000,density=2700,frictionAngle=0.6,isCohesive=True,momentRotationLaw=True,normalCohesion=-3.5e6,shearCohesion=-10e6,etaRoll=-3))
sps=SpherePack()
#sp=pack.randomDensePack(pack.inHyperboloid((0,0,-.5*specimenLength),(0,0,.5*specimenLength),.25*specimenLength,.17*specimenLength),spheresInCell=2000,radius=sphereRadius,memoizeDb='/tmp/triaxPackCache.sqlite',returnSpherePack=True)
#############################
sp=pack.SpherePack()
pred=pack.inCylinder((0,0,0.0002),(0,0,0.090),0.030)
O.bodies.append(pack.randomDensePack(pred,radius=0.00325,material=concreteId))
#pred=pack.inCylinder((0,0,0),(0,0,0.2),0.1)
#sp=pack.randomDensePack(pred,radius=0.002,material=concreteId)
#O.bodies.append(TS1)
##############
#sp=pack.randomDensePack(pack.inAlignedBox((-.25*specimenLength,-.25*specimenLength,-.5*specimenLength),(.25*specimenLength,.25*specimenLength,.5*specimenLength)),spheresInCell=2000,radius=sphereRadius,memoizeDb='/tmp/triaxPackCache.sqlite',returnSpherePack=True)
sp.toSimulation(material=concreteId)
bb=uniaxialTestFeatures()
negIds,posIds,axis,crossSectionArea=bb['negIds'],bb['posIds'],bb['axis'],bb['area']
O.dt=dtSafety*PWaveTimeStep()
print 'Timestep',O.dt
print 'sigmaT=150e3,duc30, compression,1e-4'
mm,mx=[pt[axis] for pt in aabbExtrema()]
coord_25,coord_50,coord_75=mm+.25*(mx-mm),mm+.5*(mx-mm),mm+.75*(mx-mm)
area_25,area_50,area_75=approxSectionArea(coord_25,axis),approxSectionArea(coord_50,axis),approxSectionArea(coord_75,axis)
O.engines=[
ForceResetter(),
InsertionSortCollider([Bo1_Sphere_Aabb(aabbEnlargeFactor=intRadius,label='is2aabb'),],verletDist=.05*sphereRadius),
InteractionLoop(
[Ig2_Sphere_Sphere_ScGeom(interactionDetectionFactor=intRadius,label='ss2sc')],
[Ip2_CpmMat_CpmMat_CpmPhys()],
[Law2_ScGeom_CpmPhys_Cpm()],
),
NewtonIntegrator(damping=damping,label='damper'),
CpmStateUpdater(realPeriod=.5),
UniaxialStrainer(strainRate=strainRateTension,axis=axis,asymmetry=0,posIds=posIds,negIds=negIds,crossSectionArea=crossSectionArea,blockDisplacements=False,blockRotations=False,setSpeeds=setSpeeds,label='strainer'),
PyRunner(virtPeriod=1e-6/strainRateTension,realPeriod=1,command='addPlotData()',label='plotDataCollector',initRun=True),
PyRunner(realPeriod=4,command='stopIfDamaged()',label='damageChecker'),
VTKRecorder(fileName='20d-vtk-ucs-7-',recorders=['all', 'spheres',
'velocity', 'facets', 'boxes', 'color', 'stress', 'cpm', 'wpm', 'intr', 'id',
'clumpId', 'materialId', 'jcfpm', 'cracks', 'pericell', 'liquidcontrol',
'bstresses'],iterPeriod=1000),
qt.SnapshotEngine(fileBase='3d-ucs-7-',iterPeriod=200,label='snapshot'),
]
qt.View()
#O.miscParams=[Gl1_CpmPhys(dmgLabel=False,colorStrain=False,epsNLabel=False,epsT=False,epsTAxes=False,normal=False,contactLine=True)]
#plot stresses in ¼, ½ and ¾ if desired as well; too crowded in the graph that
includes confinement, though
plot.plots={'eps':('sigma',)} #,'sigma.50')},'t':('eps')}
#'sigma.25','sigma.50','sigma.75')}
O.saveTmp('initial');
O.timingEnabled=False
global mode
mode='tension' if doModes & 1 else 'compression'
def initTest():
global mode
print "init"
if O.iter>0:
O.wait();
O.loadTmp('initial')
print "Reversing plot data"; plot.reverseData()
else: plot.plot(subPlots=False)
strainer.strainRate=abs(strainRateTension) if mode=='tension' else
-abs(strainRateCompression)
try:
from yade import qt
renderer=qt.Renderer()
renderer.dispScale=(1000,1000,1000) if mode=='tension' else
(100,100,100)
except ImportError: pass
print "init done, will now run."
O.step(); # to create initial contacts
# now reset the interaction radius and go ahead
ss2sc.interactionDetectionFactor=1.
is2aabb.aabbEnlargeFactor=1.
O.run()
###########
def stopIfDamaged():
global mode
if O.iter<2 or not plot.data.has_key('sigma'): return # do nothing at
the very beginning
sigma,eps=plot.data['sigma'],plot.data['eps']
extremum=max(sigma) if (strainer.strainRate>0) else min(sigma)
minMaxRatio=0.5 if mode=='tension' else 0.5
if extremum==0: return
import sys; sys.stdout.flush()
if abs(sigma[-1]/extremum)<minMaxRatio or abs(strainer.strain)>(5e-3 if
isoPrestress==0 else 5e-2):
if mode=='tension' and doModes & 2: # only if compression is
enabled
mode='compression'
O.save('/tmp/uniax-tension.yade.gz')
print "Saved /tmp/uniax-tension.yade.gz (for use with
interaction-histogram.py and uniax-post.py)"
print "Damaged, switching to compression... "; O.pause()
# important! initTest must be launched in a separate
thread;
# otherwise O.load would wait for the iteration to
finish,
# but it would wait for initTest to return and deadlock
would result
import thread; thread.start_new_thread(initTest,())
return
else:
print "Damaged, stopping."
ft,fc=max(sigma),min(sigma)
print 'Strengths fc=%g, ft=%g,
|fc/ft|=%g'%(fc,ft,abs(fc/ft))
title=O.tags['sigmaT=3.5e6, compression'] if
'sigmaT=3.5e6, compression' in O.tags.keys() else O.tags['params']
print
'gnuplot',plot.saveGnuplot(O.tags['id'],title=title)
print 'Bye.'
print 'sigmaT=3.5e12,duc30, compression'
O.pause()
#sys.exit(0) # results in some threading exception
def addPlotData():
yade.plot.addData({'t':O.time,'i':O.iter,'eps':strainer.strain,'sigma':strainer.avgStress+isoPrestress,
'sigma.25':forcesOnCoordPlane(coord_25,axis)[axis]/area_25+isoPrestress,
'sigma.50':forcesOnCoordPlane(coord_50,axis)[axis]/area_50+isoPrestress,
'sigma.75':forcesOnCoordPlane(coord_75,axis)[axis]/area_75+isoPrestress,
})
plot.plot(subPlots=False)
#O.run()
initTest()
waitIfBatch()
O.run(50000)
plot.plots={'eps':('sigma')}
plot.plot(subPlots=False)
plot.saveDataTxt('3000000lasstt young=26e6,sigmaT=5.4e3,duc20,
compression,frictionAngle=atan(.75)')
rr=yade.qt.Renderer()
#rr=yade.qr.Renderer()
rr.shape=False
rr.intrPhys=True
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