Question #683687 on Yade changed:
https://answers.launchpad.net/yade/+question/683687
Status: Answered => Open
Robert Caulk is still having a problem:
Hmmm, your example doesn't include a triangulation. Maybe it is a
triangulation serialization problem since CGAL is involved? If we
consider the least special case that includes a triangulation it still
doesnt work:
from __future__ import print_function
from builtins import range
from yade import pack
num_spheres=1000# number of spheres
young=1e6
compFricDegree = 3 # initial contact friction during the confining phase
finalFricDegree = 30 # contact friction during the deviatoric loading
mn,mx=Vector3(0,0,0),Vector3(1,1,1) # corners of the initial packing
O.materials.append(FrictMat(young=young,poisson=0.5,frictionAngle=radians(compFricDegree),density=2600,label='spheres'))
O.materials.append(FrictMat(young=young,poisson=0.5,frictionAngle=0,density=0,label='walls'))
walls=aabbWalls([mn,mx],thickness=0,material='walls')
wallIds=O.bodies.append(walls)
import os.path
savedState = os.path.exists('oedometer_state.yade.gz')
if not savedState:
sp=pack.SpherePack()
sp.makeCloud(mn,mx,-1,0.3333,num_spheres,False, 0.95,seed=1) #"seed"
make the "random" generation always the same
sp.toSimulation(material='spheres')
O.engines=[
ForceResetter(),
InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Box_Aabb()]),
InteractionLoop(
[Ig2_Sphere_Sphere_ScGeom(),Ig2_Box_Sphere_ScGeom()],
[Ip2_FrictMat_FrictMat_FrictPhys()],
[Law2_ScGeom_FrictPhys_CundallStrack()],label="iloop"
),
FlowEngine(dead=1,label="flow"),
GlobalStiffnessTimeStepper(active=1,timeStepUpdateInterval=100,timestepSafetyCoefficient=0.8),
NewtonIntegrator(damping=0.2,label='newton')
]
if not savedState:
#B. Activate flow engine and set boundary conditions in order to get
permeability
flow.dead=0
flow.defTolerance=-1
flow.meshUpdateInterval=-1
flow.useSolver=3
flow.permeabilityFactor=1
flow.viscosity=10
flow.bndCondIsPressure=[0,0,1,1,0,0]
flow.bndCondValue=[0,0,1,0,0,0]
flow.boundaryUseMaxMin=[0,0,0,0,0,0]
O.dt=0.1e-3
O.dynDt=False
newton.damping=0
O.run(1000,1)
print('saving oedometer state with pore pressure
at',flow.getPorePressure((0.5,0.5,0.5)))
O.save('oedometer_state.yade.gz')
else:
O.load('oedometer_state.yade.gz')
print('loaded oedometer state with pore pressure
at',flow.getPorePressure((0.5,0.5,0.5)))
O.run(100,1)
from yade import plot
def history():
plot.addData(t=O.time,p=flow.getPorePressure((0.5,0.5,0.5)))
O.engines=O.engines+[PyRunner(iterPeriod=200,command='history()',label='recorder')]
from yade import plot
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