New question #685080 on Yade:
https://answers.launchpad.net/yade/+question/685080

Hello all and thank you for your help in advanced.

I am using Yade-2019-08-08.git-775ae74 on Ubuntu18.04

I have coded a Trixial test as bellow and have some questions, but the most 
important one is the 4th question.
1- When I run my code, no plot will show up however I coded plotting commands
2- The strange problem is when I try to modify my code a little, I get nothing 
(or a filled 1-color page) as the 3D show of the specimen. 
3- The timp steps are so low and run will take a long time (more than 1 hour)
4- I cannot save the dada as a text file that I coded its command at the end of 
my code
5- I do not know how can I get micro information such as contact forces through 
my code
6- I do not see on the screen the printed test text I used in my code.
7- please let me know if I have any other problem with my code

Also, I get these warnings when I run my code:



This is my code:
In [1]: <WARNING> InsertionSortCollider:261 virtual void 
InsertionSortCollider::action(): verletDist is set to 0 because no spheres were 
found. It will result in suboptimal performances, consider setting a positive 
verletDist in your script.
<WARNING> Shop:445 static Real Shop::PWaveTimeStep(boost::shared_ptr<Scene>): 
PWaveTimeStep has not found any suitable spherical body to calculate dt. dt is 
set to 1.0


from yade import pack, plot
sp=pack.Spherepack()
mn, mx=Vector3(0,0,0), Vector3(10,10,10)
sp.makeCloud(minCorner=mn,maxCorner=mx,rRelFuzz=0.2,num=2000,porosity=0.5)      
sp.toSimulation()
O.materials.append(FrictMat(young=15e6,poisson=0.4,frictionAngle=radians(30),density=2600,label='spheres'))
     
O.materials.append(FrictMat(young=15e6,poisson=0.4,frictionAngle=0,density=0,label='frictionless'))
     
walls=aabbWalls(thickness=1e-10,material='frictionless')        
wallIds=O.bodies.append(walls)  
O.bodies.append([sphere(center,rad,material='spheres') for center, rad in sp])
triax=TriaxialCompressionEngine(
        wall_bottom_id=wallIds[2],
        wall_top_id=wallIds[3],
        wall_left_id=wallIds[0],
        wall_right_id=wallIds[1],
        wall_back_id=wallIds[4],
        wall_front_id=wallIds[5],
        internalCompaction=False,
        sigmaIsoCompaction=-50e3,
        sigmaLateralConfinement=-50e3,
        max_vel=10,
        strainRate=0.01,
        label="triax",
)
O.engines=[
        ForceResetter(),        
        InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Box_Aabb()]),      
        InteractionLoop(
        [Ig2_Sphere_Sphere_ScGeom(),Ig2_Box_Sphere_ScGeom()],   
        [Ip2_FrictMat_FrictMat_FrictPhys()],    
        [Law2_ScGeom_FrictPhys_CundallStrack()] 
        ),
        
GlobalStiffnessTimeStepper(active=1,timeStepUpdateInterval=100,timestepSafetyCoefficient=0.8),
        triax,
        NewtonIntegrato(gravity=(0,0,-9.81),damping=0.5)
        PyRunner(command='checkUnbalanced()',realPeriod=2),
        PyRunner(command='addPlotData()',iterPeriod=100),
        PyRunner(command='history()',iterPeriod=20)
]
O.dt=.5*PWaveTimeStep()
def history():
        plot.addData(i=O.iter,
        e11=-triax.strain[0],e22=-triax.strain[1],e33=-triax.strain[2],
        s11=-triax.stress(0)[0],s22=-triax.stress(2)[1],s33=-triax.stress(4)[2])
def addPlotData():
        plot.addData(unbalanced=unbalancedForce(),i=O.iter,**O.energy
                s11=-triax.stress[0],s22=-triax.stress[1],s33=-triax.stress[2],
                e11=-triax.strain[0],e22=-triax.strain[1],e33=-triax.strain[2],
                Etot=O.energy.total())
O.trackEnergy=True
def checkUnbalanced():
        if unbalancedForce()<.05:
                O.pause()
                plot.saveDataTxt('bbb.txt.bz2')
print "******  TEST TEXT  ******"
plot.plots={'i':('unbalanced'),'i ':('s11','s22','s33'),' 
i':('e11','e22','e33'),' i ':(O.energy.keys,None,'Etot'),}
Gl1_Sphere.stripes=True
O.run()
plot.plot()
O.saveTmp()
plot.saveDataTxt('results')


Thank you for your help.

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