Question #689131 on Yade changed:
https://answers.launchpad.net/yade/+question/689131

    Status: Open => Answered

Robert Caulk proposed the following answer:
-It is possible there are two few spheres to take advantage of parallel 
computing. 
-It is possible you have an expensive PyRunner running on each iteration and 
consuming the majority of the computational time

No way to know without a script.

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