Question #691277 on Yade changed:
https://answers.launchpad.net/yade/+question/691277

    Status: Open => Answered

Jan Stránský proposed the following answer:
Hello,

particles are free to move arbitrarily, regardless dimension of the periodic 
cell.
Just for the contact detection phase (and Yade GUI display), the positions are 
**virtually** wrapped into the cell (+- one period).

If instead of true particle position you want the wrapped positions, use [1] 
and export O.cell.wrap(b.state.pos) instead of b.state.pos (or do it in the 
post-processing phase).
Both approaches (true and wrapped position) are reasonable and have their use 
cases.

cheers
Jan

[1] https://yade-dem.org/doc/yade.wrapper.html#yade.wrapper.Cell.wrap

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