New question #692617 on Yade:
https://answers.launchpad.net/yade/+question/692617

I'm trying to simulate cohesion of spheres to cylinder in flow around this 
cylinder

My scriptYade.py:
############


from __future__ import print_function
import sys
from yadeimport import *
from yade.wrapper import *
from yade.utils import *

initMPI()                           #Initialize the mpi environment, always 
required.
fluidCoupling = yade.FoamCoupling();     #Initialize the engine
fluidCoupling.getRank();            #part of Initialization.


#example of spheres in shear flow : two-way point force coupling
class simulation():

        def __init__(self):
                O.periodic = True
                O.cell.setBox(1,0.4,0.2)

                numspheres=1000
                young = 5e6
                density = 2000

                mat1 = CohFrictMat(normalCohesion=1e7, shearCohesion=1e7, 
young=young, poisson=0.5, frictionAngle=radians(15), density=density, 
label='spheremat')
                O.materials.append(mat1)
                mat2 = CohFrictMat(normalCohesion=1e7, shearCohesion=1e7, 
young=young, poisson=0.5, frictionAngle=radians(15), density=density, 
label='wallmat')
                O.materials.append(mat2)

                epsilon = 1e-08
                minval = 0 + epsilon
                maxx = 1.0 - epsilon
                maxy = 0.4 - epsilon
                maxz = 0.2 - epsilon
                #wall coords, use facets for wall BC:
                v0 = Vector3(minval, minval, minval)
                v1 = Vector3(minval,minval,maxz)
                v2 = Vector3(maxx,minval,minval)
                v3 = Vector3(maxx,minval,maxz)

                v4 = Vector3(minval,maxy,minval)
                v5 = Vector3(minval,maxy,maxz)
                v6 = Vector3(maxx,maxy,minval)
                v7 = Vector3(maxx, maxy, maxz)

                lf0 = facet(vertices=[v0,v1,v2], material='wallmat')
                O.bodies.append(lf0)
                lf1 = facet(vertices=[v1,v2,v3], material='wallmat')
                O.bodies.append(lf1)

                uf0 = facet(vertices=[v4,v5,v6], material='wallmat')
                O.bodies.append(uf0)
                uf1 = facet(vertices=[v5,v6,v7], material='wallmat')
                O.bodies.append(uf1)

                ff0 = facet(vertices=[v0,v2,v6], material='wallmat')
                O.bodies.append(ff0)
                ff1 = facet(vertices=[v0,v6,v4], material='wallmat')
                O.bodies.append(ff1)

                bf0 = facet(vertices=[v1,v3,v7], material='wallmat')
                O.bodies.append(bf0)
                bf1 = facet(vertices=[v1,v7,v5], material='wallmat')
                O.bodies.append(bf1)

                oriBody = Quaternion(Vector3(1,0,0),(0))
                O.bodies.append(geom.facetCylinder((0.5,0.2,0.1), radius=0.05, 
height=0.2, orientation=oriBody, segmentsNumber=100, 
wallMask=4,material='wallmat'))

                #spheres
                mn, mx= Vector3(minval + epsilon, minval + epsilon, minval + 
epsilon), Vector3(0.45, maxy - epsilon, maxz - epsilon)
                sp = pack.SpherePack();
                sp.makeCloud(mn,mx,rMean=0.001,rRelFuzz=0.1, num=numspheres)
                O.bodies.append([sphere(center,rad,material='spheremat') for 
center,rad in sp])
                sphereIDs = [b.id for b in O.bodies if type(b.shape)==Sphere]

                #coupling engine settings
                fluidCoupling.setNumParticles(len(sphereIDs))
                fluidCoupling.setIdList(sphereIDs)
                fluidCoupling.isGaussianInterp=False;  #use pimpleFoamYade for 
gaussianInterp

                # Integrator
                newton=NewtonIntegrator(damping=0.0, gravity = (0.0 ,0.0, 0.0))
                # add small damping in case of stability issues.. ~ 0.1 max, 
also note : If gravity is needed, set it in constant/g dir.

                O.timingEnabled==True

                O.engines=[
                        ForceResetter(),
                        InsertionSortCollider([Bo1_Sphere_Aabb(), 
Bo1_Facet_Aabb()], allowBiggerThanPeriod=True),
                        InteractionLoop(
                                
[Ig2_Sphere_Sphere_ScGeom(),Ig2_Facet_Sphere_ScGeom()],
                                [Ip2_CohFrictMat_CohFrictMat_CohFrictPhys()],
                                [
                                        
Law2_ScGridCoGeom_CohFrictPhys_CundallStrack(),
                                        
Law2_CylScGeom6D_CohFrictPhys_CohesionMoment(),
                                        
Law2_ChCylGeom6D_CohFrictPhys_CohesionMoment(),
                                        
Law2_ScGeom6D_CohFrictPhys_CohesionMoment(),
                                        
Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment()
                                ]
                        ),
                        
GlobalStiffnessTimeStepper(timestepSafetyCoefficient=0.5, label = "ts"),
                        fluidCoupling, #to be called after timestepper
                        PyRunner(command='sim.printMessage()', iterPeriod= 1, 
label='outputMessage'),
                        newton,
                        
VTKRecorder(fileName='yadep/3d-vtk-',recorders=['spheres', 'facets', 'intr', 
'force'],virtPeriod=0.01)
                ]

        def printMessage(self):
                print("********************************YADE-ITER = " + 
str(O.iter) +" **********************************")
                print("********************************YADE-TIME = " + 
str(O.time) +" **********************************")

        def printDt(self):
                print(O.dt)

        def setDt(self, dt):
                O.dt = dt

        def irun(self,num):
                O.run(num,1)


if __name__=="__main__":
        sim = simulation()
        sim.irun(1000000)
        fluidCoupling.killMPI()

import builtins
builtins.sim=sim


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