Question #693698 on Yade changed: https://answers.launchpad.net/yade/+question/693698
Anton Gladky proposed the following answer: Hi, you are compiling with clang, not with gcc: -- The C compiler identification is Clang 6.0.0 -- The CXX compiler identification is Clang 6.0.0 Be sure to have empty CC and CXX environmental variables. Or set them explicitly. Regards Anton Am Do., 29. Okt. 2020 um 18:41 Uhr schrieb Sacha Duverger <question693...@answers.launchpad.net>: > > Question #693698 on Yade changed: > https://answers.launchpad.net/yade/+question/693698 > > Sacha Duverger posted a new comment: > Thank you for your answers, > > Before trying to compile with g++-7 I emptied the "build" and "install" > directories (with "rm -r build/* install/*"), this counts has a fresh > directory right? Anyway, I tried to start from a really fresh directory > (with another name) and had the same problem. > > The g++-9 installed on my machine worked well when I used it to compile > another package (this package is the reason why I upgraded g++ in the > first place). Can there still be a problem with g++-9's necessary > packages while it already worked for another package than YADE? > > I tried to compile YADE with clang but I don't see where I can identify > which package cause problems with g++. See [1] for the outputs of cmake > and make install. > > I also tried to uninstall and reinstall all of my g++ versions, hoping > that it could fix problems on the necessary packages, but it still > doesn't work. > > #################################################################################################################################################################################### > [1] : Running cmake and make with clang > > ## cmake command > > cmake -DENABLE_GUI=ON -DENABLE_MPI=OFF -DENABLE_PFVFLOW=OFF > -DENABLE_TWOPHASEFLOW=OFF -DENABLE_LBMFLOW=OFF > -DENABLE_POTENTIAL_BLOCKS=OFF -DCMAKE_CXX_COMPILER=clang > -DCMAKE_INSTALL_PREFIX=../install ../trunk > > ## cmake output > > -- The C compiler identification is Clang 6.0.0 > -- The CXX compiler identification is Clang 6.0.0 > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - done > -- Check for working C compiler: /usr/bin/cc - skipped > -- Detecting C compile features > -- Detecting C compile features - done > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Check for working CXX compiler: /usr/bin/clang - skipped > -- Detecting CXX compile features > -- Detecting CXX compile features - done > -- Version is set to 2020-10-20.git-427f64c > -- GCC Version >= 4.8. Adding -save-temps > -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") > -- Log filtering: enabled > -- Enabling boost::log library and DEBUG=OFF. Logging will work nicely, > backtraces will not have debug info, files will be small. > Loop on the following python versions and check available > dependencies:3.8;3.7;3.6;3.5;3.4;3.3;3.2;3.1;3.0;2.7;2.6 > -- Found PythonInterp: /usr/bin/python (found version "2.7.17") > -- Found PythonInterp: /usr/bin/python3.6 (found version "3.6.9") > Python version 3.6.9 found, try to import dependencies... > -- Found NumPy: version "1.18.4" > /home/sacha.duverger/.local/lib/python3.6/site-packages/numpy/core/include > -- Found IPython: /usr/lib/python3/dist-packages/IPython > -- Found matplotlib: > /home/sacha.duverger/.local/lib/python3.6/site-packages/matplotlib > -- Found pygraphviz: /usr/lib/python3/dist-packages/pygraphviz > -- Found Xlib: /usr/lib/python3/dist-packages/Xlib > -- Found future: /usr/lib/python3/dist-packages/future > -- Found past: /usr/lib/python3/dist-packages/past > -- Found tkinter: /usr/lib/python3.6/tkinter > -- Boost_VERSION: 106501 > -- Boost_LIB_VERSION: 1_65_1 > -- Boost_INCLUDE_DIRS: /usr/include > -- Boost_LIBRARIES: > /usr/lib/x86_64-linux-gnu/libboost_python3-py36.so/usr/lib/x86_64-linux-gnu/libboost_thread.so-lpthread/usr/lib/x86_64-linux-gnu/libboost_filesystem.so/usr/lib/x86_64-linux-gnu/libboost_iostreams.so/usr/lib/x86_64-linux-gnu/libboost_regex.so/usr/lib/x86_64-linux-gnu/libboost_serialization.so/usr/lib/x86_64-linux-gnu/libboost_system.so/usr/lib/x86_64-linux-gnu/libboost_date_time.so/usr/lib/x86_64-linux-gnu/libboost_log.so/usr/lib/x86_64-linux-gnu/libboost_chrono.so/usr/lib/x86_64-linux-gnu/libboost_atomic.so/usr/lib/x86_64-linux-gnu/libboost_log_setup.so > Found all python dependencies with version 3.6.9, will compile yade with that. > -- Chosen compiler flags are: CMAKE_CXX_FLAGS = -Werror -Wformat > -Wformat-security -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type > -Wuninitialized -Wfloat-conversion -Wcast-align -Wdisabled-optimization > -Wtrampolines -Wpointer-arith -Wswitch-bool -Wwrite-strings > -Wnon-virtual-dtor -Wreturn-local-addr -Wno-error=maybe-uninitialized > -Wno-comment -Wno-error=cpp -fdce -fstack-protector-strong > -- Determining preferred precision of Real numbers > -- Will now try to find python-mpmath using /usr/bin/python3.6 > -- Disabling RealHP<N>, this compiler is too old to make this work. > -- mpfr disabled > -- Will use PrecisionDouble as Real type with 15 decimal places precision and > use 64 bits of storage. > -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6") > -- Looking for BZ2_bzCompressInit > -- Looking for BZ2_bzCompressInit - found > -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") > -- Found Eigen3, version: 3.3.4 > -- Disable vectorization > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkIOParallelXML' component is 'IOParallelXML' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkCommonCore' component is 'CommonCore' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkIOImage' component is 'IOImage' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkIOXML' component is 'IOXML' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkFiltersCore' component is 'FiltersCore' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkImagingCore' component is 'ImagingCore' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkRenderingCore' component is 'RenderingCore' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkImagingGeneral' component is 'ImagingGeneral' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 > (message): > The new name for the 'vtkImagingHybrid' component is 'ImagingHybrid' > Call Stack (most recent call first): > CMakeLists.txt:642 (FIND_PACKAGE) > > > -- Found Threads: TRUE > -- Found VTK > -- Found OpenMP_C: -fopenmp=libomp (found version "3.1") > -- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) > -- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND) (found version "3.1") > -- OpenMP NOT found > -- GTS using gts-config /usr/bin/gts-config > -- Using GTS from /usr > CMake Warning (dev) at > /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 > (message): > The package name passed to `find_package_handle_standard_args` (PkgConfig) > does not match the name of the calling package (glib2). This can lead to > problems in calling code that expects `find_package` result variables > (e.g., `_FOUND`) to follow a certain pattern. > Call Stack (most recent call first): > /usr/share/cmake-3.18/Modules/FindPkgConfig.cmake:59 > (find_package_handle_standard_args) > cMake/Findglib2.cmake:30 (INCLUDE) > CMakeLists.txt:675 (FIND_PACKAGE) > This warning is for project developers. Use -Wno-dev to suppress it. > > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") > -- Checking for one of the modules 'glib-2.0' > -- Found GLib2: glib-2.0 > /usr/include/glib-2.0;/usr/lib/x86_64-linux-gnu/glib-2.0/include > -- Looking for include file glib/gregex.h > -- Looking for include file glib/gregex.h - not found > -- Found GTS > CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindOpenGL.cmake:305 > (message): > Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when > available. Run "cmake --help-policy CMP0072" for policy details. Use the > cmake_policy command to set the policy and suppress this warning. > > FindOpenGL found both a legacy GL library: > > OPENGL_gl_LIBRARY: /usr/lib/x86_64-linux-gnu/libGL.so > > and GLVND libraries for OpenGL and GLX: > > OPENGL_opengl_LIBRARY: /usr/lib/x86_64-linux-gnu/libOpenGL.so > OPENGL_glx_LIBRARY: /usr/lib/x86_64-linux-gnu/libGLX.so > > OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for > compatibility with CMake 3.10 and below the legacy GL library will be used. > Call Stack (most recent call first): > CMakeLists.txt:693 (FIND_PACKAGE) > This warning is for project developers. Use -Wno-dev to suppress it. > > -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so > -- Found GLUT: /usr/lib/x86_64-linux-gnu/libglut.so > -- USE QT5 > -- Found QGLVIEWER-qt5: /usr/include/QGLViewer > -- Found GUI-Qt5-LIBS > -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so > /usr/lib/x86_64-linux-gnu/libgmpxx.so > -- Found GMP: /usr/include/x86_64-linux-gnu > -- Found CGAL: /usr/include, /usr/lib/x86_64-linux-gnu/libCGAL.so > -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so > /usr/lib/x86_64-linux-gnu/libgmpxx.so > -- CGAL NOT found > -- Found GL2PS: /usr/lib/x86_64-linux-gnu/libgl2ps.so > -- Found GL2PS > -- Found OpenBlas: /usr/lib/x86_64-linux-gnu/libopenblas.so > -- BLAS_INCLUDE_DIR=/usr/include/x86_64-linux-gnu > -- Looking for sgemm_ > -- Looking for sgemm_ - not found > -- Looking for sgemm_ > -- Looking for sgemm_ - found > -- Found BLAS: /usr/lib/x86_64-linux-gnu/libopenblas.so > -- Looking for cheev_ > -- Looking for cheev_ - found > -- A library with LAPACK API found. > -- Found OpenBlas > -- Found Lapack > -- md5sum of freegult /usr/include/GL/freeglut_std.h is: > 791a2febd8584ec530cdd7676191b6d5 > -- freegult version is 2.8.1 > Yade will be installed to /home/sacha.duverger/packages/yade/install > -- Suffix is set to -2020-10-20.git-427f64c > -- LIBRARY_OUTPUT_PATH is set to lib/x86_64-linux-gnu > -- runtimePREFIX is set to /home/sacha.duverger/packages/yade/install > -- Could NOT find gts (missing: PY_gts) > -- Use embedded version of gts. Please, consider installing the corresponding > package > -- linking -lquadmath skipped > -- VTK version >7 is found > -- =========================================================== > -- Yade configured with following features: BoostLog PrecisionDouble Odeint > VTK GTS GUI-Qt5 FEMLIKE GL2PS PotentialParticles > -- Disabled features: RealHP mpmath MPFR OPENMP CGAL PFVFLOW LINSOLV MPI > TWOPHASEFLOW SPH DEFORM LIQMIGRATION LBMFLOW MASK_ARBITRARY THERMAL > PARTIALSAT PROFILING PotentialBlocks > -- Using MAX_LOG_LEVEL=5, ENABLE_LOGGER=ON > -- Optimized build > -- C++ standard version: 14 > -- =========================================================== > -- Configuring done > -- Generating done > -- Build files have been written to: /home/sacha.duverger/packages/yade/build > > ## make install output > > Scanning dependencies of target _GLViewer_autogen > [ 0%] Automatic MOC for target _GLViewer > Scanning dependencies of target _gts > Scanning dependencies of target _packObb > [ 0%] Building CXX object > py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o > [ 1%] Building CXX object py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o > Scanning dependencies of target _polyhedra_utils > [ 1%] Building CXX object > py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o > clang: error: unknown argument: '-fdce' > py/CMakeFiles/_gts.dir/build.make:81: recipe for target > 'py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o' failed > make[2]: *** [py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o] > Error 1 > CMakeFiles/Makefile2:355: recipe for target 'py/CMakeFiles/_gts.dir/all' > failed > make[1]: *** [py/CMakeFiles/_gts.dir/all] Error 2 > make[1]: *** Waiting for unfinished jobs.... > clang: error: unknown argument: '-fdce' > py/CMakeFiles/_packObb.dir/build.make:81: recipe for target > 'py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o' failed > make[2]: *** [py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o] Error 1 > CMakeFiles/Makefile2:437: recipe for target 'py/CMakeFiles/_packObb.dir/all' > failed > make[1]: *** [py/CMakeFiles/_packObb.dir/all] Error 2 > clang: error: unknown argument: '-fdce' > py/CMakeFiles/_polyhedra_utils.dir/build.make:81: recipe for target > 'py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o' failed > make[2]: *** [py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o] > Error 1 > CMakeFiles/Makefile2:410: recipe for target > 'py/CMakeFiles/_polyhedra_utils.dir/all' failed > make[1]: *** [py/CMakeFiles/_polyhedra_utils.dir/all] Error 2 > [ 1%] Built target _GLViewer_autogen > Makefile:148: recipe for target 'all' failed > make: *** [all] Error 2 > > You received this question notification because your team yade-users is > an answer contact for Yade. > > _______________________________________________ > Mailing list: https://launchpad.net/~yade-users > Post to : yade-users@lists.launchpad.net > Unsubscribe : https://launchpad.net/~yade-users > More help : https://help.launchpad.net/ListHelp You received this question notification because your team yade-users is an answer contact for Yade. _______________________________________________ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp