New question #697089 on Yade:
https://answers.launchpad.net/yade/+question/697089

Hello, 

following a previous post on how to erase the faces of a cylinder, I managed to 
do it using the recommended function O.bodies.erase () . This works perfectly 
without problems, except when I have a lot of particles in the system. In this 
case, when reaching the imposed condition the system freezes for a while (about 
1 hour) and then continues as usual (deleting the cylinder facets). I don't 
know if this is normal, or I am making a basic error. Maybe there is a way to 
optimize this easily.

--------------
CODE
--------------
...
cylinderFacetsIds = 
O.bodies.append(geom.facetCylinder((0,0,-0.5),0.25,3.0,segmentsNumber=30, 
wallMask=4))

sp=pack.SpherePack()
sp.makeCloud((-0.2,-0.2,-0.5),(0.2,0.2,1.0),rMean=0.03,rRelFuzz=0.1)
pred=pack.inCylinder((0.0,0.0,-4.0),(0.0,0.0,1.5),radius=0.2)
sp2 = pack.filterSpherePack(pred,sp,returnSpherePack=True)
# add the sphere pack to the simulation
sp2.toSimulation(material='sphereMat')

O.engines=[
        ForceResetter(),
        InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Facet_Aabb()]),
        InteractionLoop(
                # handle sphere+sphere and facet+sphere collisions
                [Ig2_Sphere_Sphere_ScGeom(),Ig2_Facet_Sphere_ScGeom()],
                [Ip2_FrictMat_FrictMat_FrictPhys()],
                [Law2_ScGeom_FrictPhys_CundallStrack()]
        ),
        NewtonIntegrator(gravity=(0,0,-9.81),damping=0.2),
        # call the checkUnbalanced function 
        PyRunner(iterPeriod=1,command='checkUnbalanced()')
]


def checkUnbalanced():
        if O.iter==15000:
                        for f in cylinderFacetsIds:
                                O.bodies.erase(f)
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