New question #706072 on Yade:
https://answers.launchpad.net/yade/+question/706072
Hi, I am new to yade. plz help me removing the following error.
My problem description- It is basically a simple shear problem. Firstly
isometric compression is done to prepare the sample by compacting. Periodic
boundary conditions were used. Then a plate in the form of wall is applied at
the top and normal loading is applied by velocity gradient tensor. After it
reaches the defined value then shear is applied by distorting the cell. I know
i am doing some mistake but unable to catch it up. please help me in finding
the same. Script is attacted.
Error- python3.10: ./pkg/common/InsertionSortCollider.cpp:779: bool
yade::InsertionSortCollider::spatialOverlapPeri(yade::Body::id_t,
yade::Body::id_t, yade::Scene*, yade::Vector3i&) const: Assertion `maxima[3 *
id2 + axis] - minima[3 * id2 + axis] < .99 * dim' failed.
Aborted (core dumped)
Script-
# setup the periodic boundary
from __future__ import print_function
O.periodic = True
O.cell.hSize = Matrix3(2, 0, 0, 0, 2, 0, 0, 0, 2)
# CREATION OF PARTICLES
from yade import pack, qt
#Define Material- E=7*e8, poisson=0.25, friction angle=31 degree(0.541
radians), density=2650kg/m^3
O.materials.append(FrictMat(young=7e8,poisson=.25,frictionAngle=.541,
density=2650, label="soil"))
# create cloud of spheres and insert them into the simulation
# we give corners, mean radius, radius variation, material
sp = pack.SpherePack()
sp.makeCloud((0, 0, 0), (2, 2, 2), periodic=True, rMean=0.05, rRelFuzz=0.2,
seed=10)
# insert the packing into the simulation
sp.toSimulation(material="soil")
# create "dense" packing by setting friction to zero initially
O.materials[0].frictionAngle = 0
# simulation loop (will be run at every step)
O.engines = [
ForceResetter(),
InsertionSortCollider([Bo1_Sphere_Aabb(), Bo1_Wall_Aabb()]),
InteractionLoop(
# interaction loop
[Ig2_Sphere_Sphere_ScGeom(), Ig2_Wall_Sphere_ScGeom()],
[Ip2_FrictMat_FrictMat_MindlinPhys()],
[Law2_ScGeom_MindlinPhys_Mindlin()]
),
NewtonIntegrator(damping=.4),
PyRunner(command='checkStress()', iterPeriod=100, label='checker')
]
O.dt = .7 * PWaveTimeStep()
# prescribe isotropic normal deformation (constant strain rate)
O.cell.velGrad = Matrix3(-.1, 0, 0, 0, -.1, 0, 0, 0, -.1)
qt.View()
# when to stop the isotropic compression
limitMeanStress = -1000
#Regenerating the friction
O.materials[0].frictionAngle = .54
def checkStress():
# stress tensor as the sum of normal and shear contributions
# Matrix3.Zero is the intial value for sum(...)
stress = getStress().trace()/3.
print('Stress at', O.iter, '=', stress)
# if mean stress is below (bigger in absolute value) limitMeanStress,
start shearing
if stress < limitMeanStress:
O.bodies.append(wall(max([b.state.pos[2] + b.shape.radius for b
in O.bodies if isinstance(b.shape, Sphere)]), axis=2, sense=-1))
global plate
plate = O.bodies[-1] # the last particles is the plate
# plate moves downwards by giving velocity gradient
plate.state.vel = (0, 0, -.1)
checker.command='stopplate()'
#Apply oedometric compression by applying velocity over a plate/wall
def stopplate():
force= O.forces.f(plate.id)[2]
print('Force on plate=', force)
# if the force on plate exceeds maximum load, start unloading
if O.forces.f(plate.id)[2]> 1e5:
plate.state.vel = (0, 0, 0)
print('Plate stops and Distortion is applied at 0.1 strain
rate')
#Apply Distorsion
O.cell.velGrad = Matrix3(0, 0, .1, 0, 0, 0, 0, 0, 0)
checker.command = 'checkDistorsion()'
def checkDistorsion():
# if the distorsion value is >.5, exit; otherwise do nothing
if abs(O.cell.trsf[0, 2]) > .5:
O.pause()
print('Distortion of cell exceeds 0.5')
Gl1_Sphere.stripes = True
O.saveTmp()
NOTE: Error mainly comes after isometric compression
Thank you in advance.
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