Looks like I've got a solution. My qtbase_git.bbappend now contains:

DISTRO_FEATURES:remove:rpi = " x11 wayland"
PACKAGECONFIG:append:rpi = " accessibility eglfs fontconfig gles2 linuxfb tslib 
gbm"

& this now results in an output of bitbake -v -c configure qtbase

EGL .................................... yes
OpenVG ................................. no
OpenGL:
Desktop OpenGL ....................... no
OpenGL ES 2.0 ........................ yes
OpenGL ES 3.0 ........................ yes
OpenGL ES 3.1 ........................ yes
OpenGL ES 3.2 ........................ yes
Vulkan ................................. yes
Session Management ..................... yes
Features used by QPA backends:
evdev .................................. yes
libinput ............................... yes
HiRes wheel support in libinput ........ yes
INTEGRITY HID .......................... no
mtdev .................................. no
tslib .................................. yes
xkbcommon .............................. yes
X11 specific:
XLib ................................. yes
XCB Xlib ............................. yes
EGL on X11 ........................... yes
xkbcommon-x11 ........................ yes
xcb-sm ............................... no
QPA backends:
DirectFB ............................... no
EGLFS .................................. yes
EGLFS details:
EGLFS OpenWFD ........................ no
EGLFS i.Mx6 .......................... no
EGLFS i.Mx6 Wayland .................. no
EGLFS RCAR ........................... no
EGLFS EGLDevice ...................... yes
EGLFS GBM ............................ yes
EGLFS VSP2 ........................... no
EGLFS Mali ........................... no
EGLFS Raspberry Pi ................... no
*EGLFS X11 ............................ yes*
LinuxFB ................................ yes
VNC .................................... yes
VK_KHR_display ......................... yes

Which is fairly close to the Qt setup (from here ( 
https://doc.qt.io/qt-6/configure-linux-device.html ) ) of:

EGL .................................... yes
OpenGL:
 Desktop OpenGL ....................... no
 OpenGL ES 2.0 ........................ yes
 OpenGL ES 3.0 ........................ yes
...
evdev .................................. yes
libinput ............................... yes
...
EGLFS .................................. yes
EGLFS details:
 EGLFS OpenWFD ........................ no
 EGLFS i.Mx6 .......................... no
 EGLFS i.Mx6 Wayland .................. no
 EGLFS RCAR ........................... no
 EGLFS EGLDevice ...................... yes
 EGLFS GBM ............................ yes
 EGLFS VSP2 ........................... no
 EGLFS Mali ........................... no
 EGLFS Raspberry Pi ................... no
 *EGLFS X11 ............................ no*
LinuxFB ................................ yes

The only difference is EGLFS X11, how does one remove that?
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