Hi there,

deleting the .zim folder is no problem. I sync between different machines using 
git and have the .zim folder in my .gitignore file. Obviously I end up with 
outdated .zim folders this way. However I can simply delete the whole .zim 
folder and do "Tools -> Re-build Index" and everything gets recreated.

See http://zim-wiki.org/manual/Plugins/Version_Control.html for details about 
this way to sync.

I would welcome some better solution (regarding the .zim folder) -- perhaps 
Jaap can suggest something.

I cannot reproduce your problem with links on Linux however. It works as 
intended. You should probably file a new bug on launchpad at 

Best Regrads

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