Thanks Keith. This is fixed now in the development version. Tim
On 30/10/08 12:55, "Keith James" <[EMAIL PROTECTED]> wrote: > > I'm trying to add gene names using the automatically create gene names > function under the edit menu. Here's the process: > > 1. Select 4550 CDS features using the feature selector and choose to > view them. > > 2. In the view, select all and choose automatically create gene names > from the Edit menu. Answer yes to everything, except to adding a > 'c' to complementary features. > > 3. Wait... > > > On release 9 this locked up Artemis (no component painting) for >30 > minutes before I killed it. Release 10 is better in that the paint > thread is still working, but after >30 minutes the job is not done. > > I attached a profiler and most of the time is being spent in > autonaming and autosaving. I wonder is there is some sort of bad > interaction between the automatic edits and the autosaver? > > Here's the two relevant chunks of profiler output: > > Method: > uk.ac.sanger.artemis.components.EditMenu$27.actionPerformed(java.awt.event.Act > ionEvent) > Hits : 36 > Total : 12273896.4ms > > Method: uk.ac.sanger.artemis.components.EditMenu.autoGeneName() > Hits : 36 > Total : 12273895.7ms > Local : 0.0ms > > Method: > uk.ac.sanger.artemis.components.EditMenu.autoGeneNameHelper(uk.ac.sanger.artem > is.FeatureVector,java.lang.String,int,int,java.lang.String,boolean,int) > Hits : 36 > Total : 11734965.5ms > Local : 0.0ms > > Method: > uk.ac.sanger.artemis.Feature.addQualifierValues(uk.ac.sanger.artemis.io.Qualif > ier) > Hits : 1043 > Total : 975571.2ms > Local : 0.0ms > > Method: > uk.ac.sanger.artemis.Feature.setQualifier(uk.ac.sanger.artemis.io.Qualifier) > Hits : 1043 > Total : 974744.6ms > Local : 0.0ms > > ... > > > Method: uk.ac.sanger.artemis.io.DocumentEntryAutosaveThread.run() > Hits : 36 > Total : 11733928.6ms > Local : 0.0ms > > ... > _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
