I'm a novice user of both chado & artemis, and I'm having trouble
getting artemis to see a chado db that I've recently setup. I've tried
using both artemis release 10 & 11, and am having similar problems with
both.
I'm fairly confident that I have the chado db set correctly, since I'm
able to view it under gbrowse using the host/port/database/user/pwd that
I have set. Then I've been calling up the artemis gui using this
command line:
./art -Dchado="vm22:5432/chado_dev?chuser" -Dibatis
-Djdbc.drivers=org.postgresql.Driver
Under release 10.0, the gui opens and then I get a password dialogue
box. When I type in the password, the box goes away and returns in
about 5 seconds. Its not giving me errors, the box just comes back and
asks me to enter the password again.
Under release 11.0, the gui opens, and I am only asked to enter the
password once. Then I am able to use the gui, but the file & database
management window only displays the root level directory (just the
folder icon, no name). When I click on that folder artemis just goes
into a 'working' state (with the little clock icon turning) and never
returns. I've let it run for over an hour and it just keeps churning.
Can anyone advise me on what I might be doing wrong?
Thanks,
John Martin
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