Hi Yealing Thanks for the feedback.
One way to restrict the range on a track is to define it in Artemis first, i.e. delete the features outside a range by first selecting the features in the range (select base range and then select overlapping features) and toggle the selection (under the Select menu). In that way you can temporarily delete the features outside that range and save it to a new file. Or you can filter by a list of gene names (see the first example in the manual http://www.sanger.ac.uk/resources/software/dnaplotter/#t_3) in DNAPlotter. Unfortunately there is no easy way round the arrow head problem but I will try and get time to look at that. Regards Tim On 10/29/10 1:53 AM, "Yealing" <yealingt+arte...@gmail.com> wrote: > Hello Tim > > I've had an experience with the DNA plotter where when I select to view only a > certain range of the DNA sequence, it only works on the "end" range but not > the "begin" range. For example, I have a 10kb DNA sequence and I'm interested > to plot features on 5kb-6kb. However, when I set the range at the tracks, it > plots from 1bp to 6kb. It works when I only set the "begin" range, where if I > only enter 5000 at begin and nothing for end, it will display tracks from 5kb > to 10kb. I wonder if anybody else is having that problem or if it's just me. > > Also, is there a way to automatically draw the arrow heads according to the > directions that we a;ready specify from artemis? When we have a lot of > features, it's troublesome to have to go check the direction for each of them > and manually pick arrow head or arrow tail. > > Apologies if the answers can be found in the manual, but since Kajsa was just > inquiring about the DNA plotter, I thought I might as well. > > Thanks and best regards, > -- yealing -- > > > On Thu, Oct 28, 2010 at 11:20 PM, Tim Carver <t...@sanger.ac.uk> wrote: >> Hi Kajsa The best way to avoid that is to set up the tracks first. The track >> manager works by filtering the features to display and will refresh them when >> you click UPDATE. So you should ideally do your editing after you have set >> the tracks. Regards On 10/28/10 3:59 PM, "Kajsa Himmelstrand" >> <kajsa.himmelstr...@mykopat.slu.se> wrote: > Hello, > I have a question about >> the DNAplotter to MacOSX that I got with Artemis v12. > The program doesn't >> seem to work so well. For example, when I do things in the > Track Manager, >> things that I have previously edited disappears. Do you have > any better >> upgraded version without the bugs? It would otherwise be a very > good tool >> for me to use. In other case, is there any other similar program to > use >> while DNAplotter is being upgraded? > Best regards from Kajsa >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Kajsa Himmelstrand, PhD Student >> > Swedish University of Agricultural Sciences > Department of Forest >> Mycology and Pathology > _______________________________________________ > >> Artemis-users mailing list > Artemis-users@sanger.ac.uk > >> http://lists.sanger.ac.uk/mailman/listinfo/artemis-users >> _______________________________________________ Artemis-users mailing list >> Artemis-users@sanger.ac.uk >> http://lists.sanger.ac.uk/mailman/listinfo/artemis-users > >
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